Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01019136.1 Corchorus olitorius cultivar O-4 contig19169, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  186974

Tables:   1   

This is table  1  of  1  ( 26 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1089--2223
323
3.5
320
79
8
1119
35
17
14
32
1.90
3295--3360
23
2.8
23
81
4
87
18
6
16
59
1.57
14009--14225
107
2.0
107
100
0
434
29
11
31
27
1.92
19943--20008
34
1.9
34
100
0
132
21
6
6
66
1.35
21715--21769
18
3.4
15
77
22
58
23
3
16
56
1.56
22888--23801
410
2.2
411
96
0
1677
21
27
11
40
1.87
28315--28346
16
2.0
16
93
0
55
34
12
9
43
1.75
57495--57642
80
1.9
79
88
1
224
35
18
8
36
1.82
78496--78525
15
2.0
15
100
0
60
20
6
33
40
1.78
98240--98316
29
2.5
31
83
6
95
33
22
10
33
1.88
100417--102921
994
2.5
983
78
8
2420
36
15
14
34
1.87
103205--103372
31
5.6
30
66
18
107
34
19
17
28
1.95
103209--103370
60
2.7
60
87
3
238
35
18
17
27
1.94
103411--103512
31
3.4
31
68
10
93
26
20
16
36
1.94
103413--103550
60
2.3
60
90
3
217
26
20
17
35
1.95
103413--103571
59
2.7
59
85
6
180
27
20
16
35
1.94
110738--110765
2
14.0
2
100
0
56
50
0
0
50
1.00
145941--146024
28
3.0
28
100
0
168
46
3
14
35
1.62
154279--154367
45
2.0
46
93
2
153
7
26
10
55
1.61
156407--156440
15
2.3
15
100
0
68
26
0
5
67
1.13
157030--158066
532
1.9
525
87
6
1509
36
13
17
32
1.89
179756--179803
11
4.3
11
79
10
53
75
0
10
14
1.06
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
179754--179800
23
2.0
25
91
8
80
72
0
10
17
1.12
180618--180696
32
2.5
31
83
4
106
27
12
20
39
1.89
181006--186971
331
18.0
331
77
7
5448
35
15
16
32
1.91
181002--186971
669
9.0
662
80
7
4989
35
15
16
32
1.91

Tables:   1

The End!