Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01019195.1 Corchorus olitorius cultivar O-4 contig19228, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  18839

Tables:   1   

This is table  1  of  1  ( 11 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
102--695
323
1.8
321
84
5
813
32
14
17
35
1.89
702--2522
324
5.6
320
84
4
2105
33
14
16
35
1.89
3405--4386
320
3.1
316
82
7
1018
34
13
15
35
1.87
4116--4663
278
2.0
276
80
7
628
32
14
17
35
1.90
4394--5759
320
4.2
322
81
5
1591
34
15
16
34
1.90
4394--5743
642
2.1
640
84
4
1738
33
15
16
34
1.90
5278--6311
558
1.9
556
85
2
1446
35
15
15
32
1.89
5807--10578
322
14.8
318
79
6
4341
33
14
16
35
1.89
5807--10560
323
14.8
320
79
6
4545
33
14
16
35
1.89
10777--12776
319
6.2
319
79
9
1904
33
14
17
35
1.90
12621--13002
195
1.9
195
91
3
624
37
8
17
36
1.81

Tables:   1

The End!