Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01019205.1 Corchorus olitorius cultivar O-4 contig19238, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  241108

Tables:   1   

This is table  1  of  1  ( 47 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
5--10321
658
15.7
654
82
6
11285
34
17
15
32
1.91
10223--10419
98
2.0
98
81
0
232
31
19
23
24
1.98
9974--10752
431
1.8
423
83
7
1036
33
17
16
31
1.93
11468--11499
2
16.0
2
100
0
64
50
0
0
50
1.00
10314--13192
988
2.9
971
85
6
3633
34
16
15
33
1.91
166--10327
986
10.3
978
75
11
6566
34
17
15
32
1.91
10533--12962
328
7.4
328
76
12
2066
34
16
15
33
1.90
10315--13193
653
4.4
642
77
11
2305
34
16
15
33
1.91
13052--13353
160
1.9
160
87
2
446
33
17
10
39
1.83
18465--27939
330
28.6
330
77
10
8004
35
16
15
32
1.90
18465--27939
333
28.6
330
77
10
7514
35
16
15
32
1.90
28931--28965
5
6.8
5
87
6
52
57
2
20
20
1.54
34266--34292
7
3.9
7
100
0
54
55
14
14
14
1.70
49990--50017
12
2.3
12
100
0
56
50
32
17
0
1.47
50202--50246
12
3.8
12
85
8
65
73
8
8
8
1.26
50202--50246
13
3.8
11
85
8
54
73
8
8
8
1.26
51173--51302
45
2.9
45
97
0
251
37
22
6
33
1.81
60384--60512
31
4.2
31
83
2
152
34
29
23
12
1.91
60375--60512
62
2.2
62
81
2
170
34
28
23
13
1.92
80988--81021
2
17.0
2
100
0
68
50
0
0
50
1.00
82438--82500
31
2.0
31
90
0
99
9
15
25
49
1.75
86731--86780
2
25.0
2
91
0
82
48
2
2
48
1.24
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
93323--93364
21
2.0
21
85
0
57
14
23
0
61
1.32
101261--101331
37
1.9
37
94
0
124
21
14
14
50
1.77
115252--115294
1
43.0
1
100
0
86
100
0
0
0
0.00
126470--126494
11
2.3
11
100
0
50
8
0
0
92
0.40
136942--136976
16
2.1
18
89
10
56
54
17
20
8
1.68
152000--152089
45
2.0
45
95
0
162
36
16
12
34
1.86
162134--162190
29
2.0
29
89
6
89
38
8
15
36
1.79
166300--166340
2
20.5
2
94
0
73
48
2
0
48
1.14
166817--166896
26
3.1
26
81
12
85
41
5
3
50
1.42
191281--191312
10
3.1
10
91
8
55
87
0
12
0
0.54
196524--196597
34
2.2
34
97
0
139
29
4
21
44
1.71
196952--197033
29
2.8
29
83
9
94
41
17
14
26
1.88
197160--197200
16
2.5
17
88
4
57
70
0
0
29
0.87
200307--200339
6
5.5
6
100
0
66
51
30
18
0
1.46
211432--211460
5
6.0
5
92
8
51
20
0
0
79
0.74
211432--211460
14
2.0
15
93
6
51
20
0
0
79
0.74
218000--218103
51
2.0
51
94
0
181
36
22
17
24
1.94
219577--228339
330
26.6
329
81
5
9547
34
14
16
35
1.88
228336--233051
660
7.3
658
85
5
6347
34
14
16
35
1.89
231074--233051
327
6.1
330
80
6
2118
34
14
16
34
1.89
231074--233051
643
3.0
642
87
4
2785
34
14
16
34
1.89
233213--233254
15
2.7
15
92
3
66
64
14
9
11
1.50
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
234874--237691
658
4.3
656
86
4
3391
34
13
16
35
1.88
234878--237704
983
2.9
971
84
4
3359
34
13
16
35
1.88
238560--238604
22
2.1
22
87
4
65
40
4
13
42
1.64

Tables:   1

The End!