Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01019210.1 Corchorus olitorius cultivar O-4 contig19243, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  151367

Tables:   1   

This is table  1  of  1  ( 21 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
46603--46638
6
6.0
6
93
0
63
36
50
0
13
1.43
47140--47206
35
1.9
35
100
0
134
44
8
14
31
1.76
49553--49578
5
5.2
5
100
0
52
42
0
19
38
1.51
58895--58962
12
6.2
12
79
19
85
7
20
0
72
1.09
58905--58959
10
5.3
10
82
8
74
9
20
0
70
1.13
58905--58962
21
2.8
21
100
0
116
8
20
0
70
1.13
59202--59271
33
2.1
33
100
0
140
32
11
11
44
1.76
61495--61664
81
2.1
81
95
0
304
15
21
24
37
1.93
84439--84472
3
11.3
3
100
0
68
0
32
0
67
0.91
92981--93015
9
4.1
9
85
14
56
34
11
0
54
1.37
92985--93015
16
1.9
16
100
0
62
32
12
0
54
1.38
103237--103280
13
3.4
13
87
9
54
45
4
9
40
1.56
114655--114684
6
5.0
6
95
0
51
53
33
13
0
1.40
117907--117956
25
2.0
25
96
0
91
24
8
10
58
1.57
117971--118032
26
2.4
26
84
10
83
35
12
22
29
1.91
133832--133909
37
2.1
37
100
0
156
26
17
7
47
1.75
135921--135990
33
2.1
33
100
0
140
34
17
17
31
1.93
147592--148844
319
3.9
319
82
5
1373
35
17
15
31
1.91
147628--149186
647
2.4
637
79
9
1486
36
17
15
31
1.91
149365--151361
331
6.1
326
79
8
1939
35
16
14
32
1.90
149365--151361
655
3.0
654
87
3
2644
35
16
14
32
1.90

Tables:   1

The End!