genome.fa.s19218.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01019218.1 Corchorus olitorius cultivar O-4 contig19251, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  151268

Tables:   1   

This is table  1  of  1  ( 39 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1231--1261	2	15.5	2	100	0	62	48	0	0	51	1.00
2688--3061	178	2.1	172	82	5	457	36	15	14	33	1.88
4019--4054	16	2.2	17	90	5	56	27	0	5	66	1.13
4640--4698	16	3.7	16	80	6	66	3	38	3	54	1.34
4716--4867	76	2.0	75	97	1	286	51	5	28	13	1.64
36538--38418	318	5.8	319	73	12	970	36	14	14	34	1.86
36863--38419	650	2.4	643	83	4	1898	36	14	14	34	1.87
39167--40632	646	2.2	651	83	6	1754	37	15	14	32	1.88
39541--40996	336	4.4	328	79	9	1255	37	14	14	33	1.87
40965--41138	87	2.0	87	100	0	348	40	17	9	33	1.81
41752--42111	118	3.1	118	92	2	584	49	8	7	33	1.63
42144--42255	8	14.9	8	76	19	116	53	0	22	24	1.46
42155--42245	21	4.3	21	75	15	98	54	0	20	24	1.44
42155--42245	13	6.5	13	81	11	101	54	0	20	24	1.44
42147--42255	34	3.4	34	76	19	115	54	0	22	23	1.45
48183--48225	22	1.9	22	85	4	59	39	20	2	37	1.66
48248--48290	22	2.0	20	86	8	59	27	13	4	53	1.60
48453--48721	44	6.3	43	75	12	155	36	14	8	40	1.76
48256--48721	22	21.5	22	70	16	136	36	15	9	38	1.79
48831--48882	22	2.4	22	80	3	61	38	11	3	46	1.59
48849--48974	66	1.9	66	81	0	153	33	12	9	44	1.75
48916--48975	22	2.7	22	84	0	75	36	11	11	40	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48836--48975	44	3.2	43	75	6	129	32	13	9	44	1.76
51722--52895	322	3.6	317	77	8	1011	35	16	16	32	1.91
52905--53646	335	2.2	329	83	5	926	35	17	14	31	1.90
54350--55800	333	4.4	317	78	9	1330	35	16	15	32	1.90
60032--60059	1	28.0	1	100	0	56	0	0	0	100	0.00
62787--62856	36	1.9	36	88	0	104	21	11	8	58	1.59
64803--64912	56	2.0	55	94	1	193	34	22	2	40	1.69
64809--64918	55	2.0	56	87	3	161	37	20	2	39	1.67
64979--65058	42	1.9	42	94	0	142	30	6	15	48	1.69
65775--65855	39	2.0	40	92	2	137	37	3	8	50	1.51
66065--66119	2	27.5	2	82	14	69	47	0	3	49	1.19
86750--86777	2	14.0	2	100	0	56	50	0	0	50	1.00
93861--94115	131	2.0	127	89	7	394	38	11	1	49	1.49
94101--94139	14	2.9	13	80	3	51	41	2	2	53	1.28
130564--130600	19	1.9	19	94	0	65	16	35	13	35	1.88
130650--130708	21	2.9	21	80	14	70	33	18	11	35	1.88
149905--151268	634	2.2	634	99	0	2719	32	15	18	33	1.93

Tables:   1

The End!