Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01019222.1 Corchorus olitorius cultivar O-4 contig19255, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  13786

Tables:   1   

This is table  1  of  1  ( 11 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1--1098
337
3.3
334
88
3
1575
35
15
15
33
1.89
2046--2076
16
1.9
16
93
0
53
41
38
16
3
1.64
2116--3455
337
4.1
330
82
7
1506
35
16
15
32
1.91
4119--7827
332
11.2
332
86
2
5034
35
16
15
32
1.90
4125--7827
665
5.6
666
87
2
5098
35
16
15
32
1.90
4128--13682
997
9.3
995
73
12
6389
35
16
15
32
1.90
7287--8386
558
2.0
558
87
3
1595
35
15
15
33
1.89
7845--13688
331
17.4
331
79
7
5615
36
15
15
32
1.89
11566--11591
13
2.0
13
100
0
52
46
7
15
30
1.74
11579--13692
329
6.4
331
82
6
2324
36
15
15
32
1.89
11581--13682
657
3.2
652
83
7
2531
36
15
15
32
1.89

Tables:   1

The End!