Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01019384.1 Corchorus olitorius cultivar O-4 contig19417, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  41010

Tables:   1   

This is table  1  of  1  ( 15 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
3520--5670
480
4.4
482
88
5
3093
23
25
7
42
1.81
5065--5129
33
2.0
33
100
0
130
27
21
9
41
1.83
6013--6044
15
2.1
15
94
0
55
62
9
0
28
1.26
6024--6057
13
2.6
13
85
0
50
67
11
0
20
1.21
8742--8928
94
2.0
94
97
0
356
31
13
23
31
1.93
9531--9588
23
2.5
23
97
0
107
15
25
5
53
1.63
10720--10752
6
5.0
7
85
14
52
84
0
15
0
0.61
10720--10752
13
2.5
13
100
0
66
84
0
15
0
0.61
20949--20980
16
2.1
16
94
5
57
0
18
0
81
0.70
32497--32547
24
2.1
24
96
0
93
25
9
17
47
1.78
32715--32792
39
2.0
39
97
0
147
21
7
29
41
1.81
38268--38395
64
2.0
62
95
3
229
50
23
10
16
1.75
38993--39111
59
2.0
59
100
0
238
35
21
16
26
1.95
40222--40415
65
3.0
65
96
0
363
25
6
27
40
1.79
40800--40862
31
2.0
31
100
0
126
41
17
25
15
1.89

Tables:   1

The End!