Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01019395.1 Corchorus olitorius cultivar O-4 contig19428, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  116949

Tables:   1   

This is table  1  of  1  ( 29 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
26744--26811
22
3.2
22
64
26
56
39
26
8
25
1.85
26747--26815
23
3.2
23
64
26
60
42
21
8
27
1.82
26742--26824
41
2.0
41
97
0
157
39
24
8
27
1.84
47726--47779
26
2.1
26
96
0
99
24
20
20
35
1.96
48154--48186
7
4.9
7
88
3
50
0
60
0
39
0.97
63572--63632
30
2.1
30
84
3
79
49
3
4
42
1.40
69382--69423
12
3.5
11
87
12
57
30
7
21
40
1.80
73544--74134
22
27.2
22
69
15
191
35
15
9
39
1.81
74250--74679
22
19.4
22
72
10
158
35
15
9
39
1.80
74219--74412
44
4.4
44
75
10
157
35
12
9
43
1.74
74337--74631
158
1.9
159
80
10
354
36
15
9
37
1.81
74719--74775
22
2.5
22
82
5
69
40
17
8
33
1.81
74713--74855
68
2.1
66
79
7
155
39
18
7
33
1.80
74763--74911
22
6.8
21
70
8
93
38
16
8
37
1.78
74713--74909
66
3.0
66
77
8
177
39
17
8
34
1.80
75082--75120
20
2.0
20
85
10
53
64
2
5
28
1.28
77338--77431
29
3.1
29
78
7
100
18
13
30
37
1.90
79279--79547
113
2.5
105
86
6
344
42
8
7
40
1.64
81930--81986
30
1.9
30
85
0
78
38
14
19
28
1.90
83948--83997
16
3.2
16
72
16
50
32
6
4
58
1.41
85657--85716
9
6.8
9
81
11
79
86
0
0
13
0.57
85657--85713
5
11.8
5
83
12
75
85
0
0
14
0.59
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
85657--85713
30
1.9
29
96
3
105
85
0
0
14
0.59
86127--86153
2
13.5
2
100
0
54
0
0
48
51
1.00
86995--87063
33
2.1
33
97
0
129
23
10
23
43
1.84
95642--95675
14
2.4
14
85
14
52
0
23
0
76
0.79
102795--102854
32
1.9
31
83
6
77
30
23
23
23
1.99
113178--113224
14
3.1
15
82
11
53
38
0
2
59
1.09
114268--116942
331
8.1
328
76
8
2303
33
14
15
37
1.88

Tables:   1

The End!