Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01019403.1 Corchorus olitorius cultivar O-4 contig19436, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  72284

Tables:   1   

This is table  1  of  1  ( 16 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
521--4322
678
5.7
648
77
11
2903
35
16
15
32
1.90
514--4317
333
11.4
330
76
9
3037
35
16
15
32
1.90
4964--5024
27
2.3
27
85
5
79
45
1
9
42
1.47
4948--5143
95
2.0
97
87
1
279
53
3
11
32
1.52
11026--11070
16
2.8
17
80
13
58
71
15
11
2
1.24
11700--11750
17
3.1
16
86
8
66
21
21
21
35
1.96
17832--17866
17
2.1
17
94
0
61
40
2
17
40
1.64
20457--20551
50
1.9
50
95
0
172
12
18
22
46
1.83
32002--32083
29
2.7
29
81
5
83
17
30
13
39
1.88
35639--35675
19
1.9
19
94
0
65
37
13
18
29
1.90
39038--39077
20
2.0
20
100
0
80
15
20
15
50
1.79
55550--57195
330
5.0
326
80
7
1794
36
15
14
33
1.89
57883--59872
656
3.0
655
87
4
2593
37
14
14
33
1.86
57883--59870
331
6.0
331
80
5
2102
37
14
14
33
1.86
60725--60754
15
2.0
15
93
0
51
50
6
0
43
1.28
61912--61949
19
2.0
20
84
5
51
50
2
7
39
1.46

Tables:   1

The End!