genome.fa.s19427.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01019427.1 Corchorus olitorius cultivar O-4 contig19460, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  161857

Tables:   1   

This is table  1  of  1  ( 60 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
22178--22207	6	5.0	6	100	0	60	0	16	0	83	0.65
29757--29918	78	2.1	78	95	0	288	33	14	1	50	1.54
31000--31038	14	2.9	13	80	3	51	41	2	2	53	1.28
36095--36176	40	2.0	40	88	0	119	39	15	15	29	1.89
36219--36243	12	2.1	12	100	0	50	44	16	8	32	1.76
36433--36477	21	2.1	22	87	4	65	13	42	8	35	1.75
36577--36601	12	2.1	12	100	0	50	40	16	20	24	1.91
36688--36725	11	3.6	11	82	13	53	28	0	0	71	0.87
36699--36742	11	4.0	11	82	8	54	36	0	0	63	0.95
36712--36783	7	10.1	7	76	18	51	45	0	1	52	1.09
36706--36782	10	8.0	10	73	13	54	44	0	1	54	1.08
36803--37000	33	6.0	33	85	4	240	19	31	34	14	1.92
36803--37000	66	3.0	66	84	2	265	19	31	34	14	1.92
36803--36993	99	1.9	98	88	3	285	19	31	34	14	1.92
38711--38887	45	3.9	45	91	2	273	28	10	21	39	1.86
41355--41395	19	2.2	19	100	0	82	34	17	19	29	1.94
41924--42042	38	3.1	38	80	11	143	35	12	17	34	1.88
43795--44057	92	2.9	89	89	3	400	25	12	16	45	1.83
54720--54790	27	2.9	24	89	8	99	42	14	12	30	1.82
57109--57161	22	2.5	22	79	17	58	30	16	9	43	1.80
57447--57545	52	1.9	51	85	6	137	13	11	18	57	1.64
62482--62551	35	2.0	35	91	0	113	30	5	35	28	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
87681--87730	21	2.4	22	80	16	61	20	6	8	66	1.40
88163--88293	53	2.5	53	97	0	244	6	31	25	35	1.83
92763--92796	17	2.0	17	94	0	59	64	14	5	14	1.46
92755--92836	24	3.5	24	90	5	114	60	13	8	17	1.56
93849--93909	15	4.1	15	86	0	77	21	29	29	19	1.98
94098--94151	24	2.2	24	93	0	90	22	40	7	29	1.81
94783--94811	13	2.2	13	100	0	58	44	17	0	37	1.49
96803--97525	328	2.2	328	83	3	918	37	15	14	32	1.88
97875--102158	328	13.1	326	84	6	5170	35	17	15	30	1.92
97875--102165	660	6.5	659	85	6	5459	35	17	15	30	1.92
102171--102766	316	1.9	317	90	0	951	34	17	15	31	1.92
102495--103055	291	1.9	289	85	3	779	36	18	14	31	1.90
103657--109479	332	17.8	332	85	5	7407	35	17	15	31	1.91
103657--109479	662	8.9	660	85	5	7287	35	17	15	31	1.91
103657--109479	994	5.9	988	86	5	7613	35	17	15	31	1.91
109489--110022	52	10.3	52	91	3	835	28	23	16	31	1.96
109992--110049	30	1.9	30	96	0	107	29	22	6	41	1.80
109940--110105	83	2.0	82	95	1	296	29	22	12	34	1.91
109888--110157	135	2.0	134	92	0	450	28	23	14	34	1.93
110022--110515	51	9.5	51	90	2	711	27	21	15	35	1.94
111396--111479	42	2.2	36	80	19	100	22	34	4	38	1.75
111405--111485	42	1.9	42	97	0	153	22	33	4	39	1.75
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
111711--111819	38	3.0	38	70	15	122	37	17	11	33	1.85
111691--111793	32	3.0	32	71	15	107	37	19	11	31	1.87
112430--112523	47	2.0	47	93	0	161	46	7	20	25	1.76
117079--117258	48	3.8	46	73	12	134	39	19	18	22	1.92
117922--118187	48	5.6	47	72	12	148	39	21	15	22	1.91
117934--118182	95	2.6	93	75	10	225	39	22	16	22	1.92
118158--118240	38	2.2	37	82	2	94	37	27	14	20	1.92
118195--118321	48	2.6	48	82	2	157	39	24	17	18	1.92
119479--119620	47	3.0	45	72	8	122	37	22	18	21	1.94
119836--119931	48	2.0	48	81	4	113	40	20	17	20	1.91
120700--120875	84	2.1	86	79	4	187	40	21	18	19	1.91
130831--130886	27	2.1	27	100	0	112	19	21	16	42	1.89
131605--131708	51	2.0	51	94	0	181	25	19	23	31	1.98
134584--134614	15	2.1	15	100	0	62	51	6	12	29	1.65
144215--144259	22	2.0	22	100	0	90	40	13	17	28	1.88
161805--161831	1	27.0	1	100	0	54	100	0	0	0	0.00

Tables:   1

The End!