Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01019468.1 Corchorus olitorius cultivar O-4 contig19501, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  16947

Tables:   1   

This is table  1  of  1  ( 19 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1848--1875
13
2.2
13
100
0
56
21
7
50
21
1.72
1842--1945
41
2.5
43
82
6
133
23
15
39
22
1.91
2182--2207
1
26.0
1
100
0
52
100
0
0
0
0.00
2708--2751
22
2.0
22
86
0
61
36
9
4
50
1.55
2721--3124
22
18.5
21
69
11
170
35
17
8
38
1.81
2861--2954
43
2.2
44
82
1
109
38
20
8
32
1.83
3116--3229
43
2.6
44
81
10
128
31
18
13
36
1.89
2886--3864
22
44.7
22
69
8
395
32
18
11
36
1.87
3509--3545
19
1.9
19
88
0
56
32
16
16
35
1.91
9952--10201
123
2.0
124
86
6
344
34
13
13
38
1.84
10260--10396
68
2.0
68
98
0
265
38
17
13
29
1.89
11065--11089
12
2.1
12
100
0
50
60
40
0
0
0.97
11207--11266
23
2.6
23
97
0
111
33
25
10
31
1.89
12675--12713
20
2.1
19
85
9
53
43
33
5
17
1.72
13306--13414
25
4.3
25
94
2
164
38
32
13
15
1.87
13798--13854
30
2.0
28
86
6
78
24
21
0
54
1.45
15413--15471
30
2.0
30
86
0
82
32
16
13
37
1.88
15617--15651
18
1.9
18
88
0
52
80
0
11
8
0.92
16694--16723
15
2.0
15
93
0
51
43
26
10
20
1.83

Tables:   1

The End!