Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01019472.1 Corchorus olitorius cultivar O-4 contig19505, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  43105

Tables:   1   

This is table  1  of  1  ( 26 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1393--1451
19
3.0
19
85
5
73
32
22
11
33
1.90
3794--3920
45
2.8
45
93
0
218
39
21
6
33
1.78
4877--4919
2
21.0
2
95
4
77
48
0
2
48
1.14
7873--7918
17
2.8
17
80
16
60
67
8
0
23
1.18
8066--8094
2
15.0
2
92
7
51
48
0
0
51
1.00
8121--8154
16
2.1
16
100
0
68
44
0
0
55
0.99
9302--9326
13
1.9
13
100
0
50
16
48
16
20
1.82
9613--9751
18
8.4
18
64
27
67
6
25
20
48
1.73
9588--9780
48
4.1
47
80
7
194
7
25
19
48
1.74
15138--15181
22
1.9
24
86
9
65
38
6
25
29
1.81
15617--15648
10
3.2
10
95
0
55
28
18
9
43
1.81
17122--17161
20
2.0
21
90
5
64
37
17
27
17
1.92
17140--17194
28
2.0
28
92
0
92
41
20
20
18
1.90
17422--17453
10
3.2
10
95
0
55
28
18
9
43
1.81
19596--19654
30
2.0
29
90
3
91
50
3
3
42
1.35
21789--21842
28
1.9
28
85
7
74
55
1
0
42
1.10
21901--22021
38
3.1
38
72
15
111
21
47
9
22
1.79
27438--27528
42
2.3
40
83
10
109
18
47
8
25
1.77
28468--28518
22
2.2
24
83
16
72
41
0
0
58
0.98
28468--28516
25
2.0
25
84
8
64
40
0
0
59
0.98
33930--33978
21
2.3
21
96
0
89
38
18
20
22
1.93
33990--34064
33
2.3
33
100
0
150
22
25
25
26
2.00
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
36705--36758
20
2.7
20
100
0
108
40
22
9
27
1.84
37814--37986
71
2.6
63
83
13
247
38
8
19
34
1.81
37852--38004
71
2.1
72
95
1
281
37
7
20
33
1.81
39093--39150
26
2.2
26
100
0
116
25
8
53
12
1.66

Tables:   1

The End!