Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01019503.1 Corchorus olitorius cultivar O-4 contig19536, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  40304

Tables:   1   

This is table  1  of  1  ( 22 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
227--339
54
2.2
51
81
7
122
38
5
1
53
1.34
419--445
14
1.9
14
100
0
54
55
0
0
44
0.99
2836--2915
24
3.4
22
71
20
63
20
17
1
61
1.42
2997--3090
24
3.9
24
71
16
70
20
19
1
59
1.44
3182--3413
38
6.5
37
77
5
180
27
17
1
53
1.54
3182--3358
37
4.8
37
79
5
180
27
16
1
54
1.52
3192--3357
75
2.2
75
90
2
255
25
16
1
56
1.48
3328--3413
32
2.7
32
83
1
109
27
19
1
51
1.55
3324--3406
33
2.5
33
84
5
107
28
20
1
49
1.57
19685--19717
17
2.0
17
88
5
50
69
0
9
21
1.15
22427--22488
29
2.1
29
90
0
97
30
3
17
48
1.63
23962--24008
23
2.0
23
87
0
67
44
17
34
4
1.68
23974--24018
23
2.0
23
86
0
63
44
15
37
2
1.59
28875--29248
75
5.0
75
83
2
457
34
19
15
30
1.93
28883--29248
149
2.5
148
84
1
464
34
19
15
29
1.93
31001--31074
32
2.3
32
85
0
94
21
20
21
36
1.95
32922--32948
2
13.5
2
100
0
54
48
0
0
51
1.00
38212--38263
10
5.0
10
77
13
52
80
3
15
0
0.85
38212--38263
15
3.3
16
73
10
54
80
3
15
0
0.85
38212--38263
21
2.5
19
79
14
50
80
3
15
0
0.85
39087--39146
30
2.0
30
86
0
84
16
21
15
46
1.83
39123--39168
24
1.9
24
100
0
92
13
19
21
45
1.84

Tables:   1

The End!