genome.fa.s19531.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01019531.1 Corchorus olitorius cultivar O-4 contig19564, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  204068

Tables:   1   

This is table  1  of  1  ( 48 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
521--605	23	3.6	24	73	16	88	14	36	36	12	1.84
512--615	47	2.2	47	100	0	208	11	35	40	12	1.79
11695--11755	31	1.9	33	86	6	90	32	9	19	37	1.85
14816--14853	19	2.0	19	89	0	58	36	18	23	21	1.95
15401--15438	20	1.9	20	88	0	58	42	7	15	34	1.76
19628--19681	28	1.9	28	92	0	90	35	16	20	27	1.94
22181--22217	17	2.2	17	90	9	58	37	2	16	43	1.62
24336--24399	30	2.1	32	85	11	89	46	12	15	25	1.81
25239--25270	16	2.0	16	100	0	64	37	18	18	25	1.94
25735--25767	17	1.9	17	88	11	50	48	3	3	45	1.33
31599--31862	131	2.0	131	93	0	456	37	14	10	36	1.82
31991--35717	333	11.2	330	81	5	4137	33	14	14	36	1.88
31991--35717	334	11.2	331	82	5	4195	33	14	14	36	1.88
36319--40707	333	13.2	333	81	5	4802	33	14	14	37	1.87
31990--40707	666	13.1	663	78	8	7805	33	14	14	36	1.87
50132--50250	59	2.0	59	98	0	229	26	15	11	47	1.79
55340--55388	24	2.0	24	96	0	89	38	14	8	38	1.76
71778--71808	16	1.9	16	93	0	53	61	0	38	0	0.96
80772--80829	19	2.9	19	80	9	71	39	12	18	29	1.87
81110--81138	13	2.1	14	93	6	51	51	0	0	48	1.00
87792--87824	12	2.6	13	85	9	50	0	18	0	81	0.68
89620--89648	3	9.7	3	100	0	58	0	31	0	68	0.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
90740--90770	6	5.2	6	100	0	62	35	32	0	32	1.58
95282--95307	6	4.3	6	100	0	52	0	15	0	84	0.62
120068--120219	75	2.0	75	93	0	259	24	15	26	34	1.94
134121--134162	20	2.1	20	100	0	84	28	19	9	42	1.82
134358--134427	4	18.8	4	77	14	62	70	2	27	0	1.02
134362--134441	26	2.7	29	74	20	60	68	2	25	3	1.18
145694--145737	19	2.3	19	84	0	61	4	18	2	75	1.09
157994--158036	13	3.4	13	80	3	52	11	4	0	83	0.78
158747--158783	18	2.1	18	100	0	74	51	5	16	27	1.66
159370--159421	26	2.0	26	92	0	86	57	11	23	7	1.59
161910--161976	34	1.9	35	82	8	84	44	2	5	46	1.43
174556--174610	25	2.2	24	75	9	56	25	12	10	50	1.73
175374--175415	22	1.9	22	85	9	59	4	30	0	64	1.14
175516--175552	15	2.5	15	100	0	74	5	37	13	43	1.67
179692--179816	45	2.8	45	90	0	187	22	25	20	31	1.98
180737--181682	62	15.2	62	90	5	1423	3	40	20	34	1.70
181080--181126	14	3.4	14	71	11	51	0	44	6	48	1.28
181083--181126	10	4.6	10	78	21	58	0	45	6	47	1.29
181228--181252	10	2.5	10	100	0	50	0	52	0	48	1.00
181248--181682	175	2.4	175	92	4	699	3	40	22	33	1.71
181238--181667	237	1.8	237	96	0	797	3	40	22	33	1.71
181663--181693	14	2.2	14	100	0	62	0	41	6	51	1.27
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
183630--188388	323	14.7	320	78	7	4606	35	16	14	32	1.90
183482--188665	641	8.1	639	79	7	4595	35	16	14	32	1.89
188112--188665	285	1.9	288	81	3	679	37	16	11	34	1.84
191836--191878	15	2.7	16	89	7	61	69	0	27	2	1.00

Tables:   1

The End!