Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01019578.1 Corchorus olitorius cultivar O-4 contig19611, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  14122

Tables:   1   

This is table  1  of  1  ( 19 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1629--1748
22
5.6
21
76
14
86
36
15
9
38
1.80
1594--1660
34
1.9
35
90
3
109
38
10
8
41
1.71
1667--1729
23
2.9
21
81
11
72
38
15
6
39
1.73
1632--1737
44
2.4
44
80
10
112
36
16
8
37
1.80
1643--1754
21
5.1
21
80
9
100
33
20
8
36
1.84
4378--4512
69
2.0
69
88
5
202
48
14
13
24
1.79
5615--5653
20
2.0
20
85
10
53
35
5
5
53
1.45
5660--5727
16
4.3
16
74
9
68
5
10
33
50
1.61
5664--5727
15
4.1
15
76
7
65
6
10
31
51
1.62
6528--6593
34
1.9
34
90
0
105
36
18
16
28
1.93
7313--7372
29
2.2
27
82
11
77
33
18
5
43
1.72
10518--10565
8
6.0
8
82
0
60
47
4
20
27
1.68
10559--10685
67
1.9
67
82
6
159
39
25
17
18
1.92
10805--11208
35
11.4
35
76
4
351
39
21
19
19
1.92
10924--11119
72
2.7
72
82
0
232
42
20
17
18
1.89
10818--11208
107
3.7
106
82
3
426
40
20
19
19
1.92
10817--11201
179
2.2
178
83
1
495
40
21
18
19
1.91
12975--13007
14
2.4
14
90
5
50
30
9
15
45
1.77
13419--13455
2
18.5
2
94
0
65
51
2
0
45
1.15

Tables:   1

The End!