Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01019632.1 Corchorus olitorius cultivar O-4 contig19665, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  60750

Tables:   1   

This is table  1  of  1  ( 18 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
243--313
32
2.2
32
87
0
97
47
18
12
21
1.81
504--530
14
1.9
14
100
0
54
44
0
11
44
1.39
11194--11252
21
3.0
21
64
19
54
42
16
0
40
1.49
11178--11252
38
1.9
38
89
7
116
41
18
0
40
1.51
26941--26989
13
3.7
13
80
2
53
61
0
32
6
1.21
27119--27163
17
2.5
18
86
13
58
22
6
0
71
1.09
30599--30643
22
2.0
22
95
0
81
44
11
4
40
1.60
39765--39825
31
1.9
33
90
6
99
42
18
8
31
1.79
39804--39848
22
2.0
22
100
0
90
44
8
8
37
1.67
40833--40911
33
2.4
33
85
4
115
1
39
2
56
1.21
44778--44826
21
2.3
21
100
0
98
36
10
12
40
1.77
44932--45048
60
2.0
60
100
0
234
30
22
24
22
1.99
45064--45099
15
2.4
15
90
0
54
55
5
16
22
1.62
46932--46971
20
2.0
20
85
5
53
67
2
7
22
1.28
49172--49236
29
2.2
29
94
0
112
40
15
20
24
1.91
52820--55482
651
4.1
650
86
5
3590
36
16
14
32
1.89
55700--60735
332
15.2
329
77
7
4895
35
16
15
32
1.90
55523--60735
656
7.9
662
88
2
7384
35
16
15
32
1.90

Tables:   1

The End!