Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01019644.1 Corchorus olitorius cultivar O-4 contig19677, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  76293

Tables:   1   

This is table  1  of  1  ( 20 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
5622--5651
14
2.1
15
93
6
53
53
6
13
26
1.64
8307--8346
21
1.9
21
89
0
62
60
15
10
15
1.60
8507--8653
26
5.7
26
97
0
276
36
24
14
24
1.93
8507--11017
52
48.9
52
90
5
3678
34
24
14
26
1.94
8507--11017
77
32.6
78
89
5
3678
34
24
14
26
1.94
8640--8669
15
2.0
15
100
0
60
40
13
13
33
1.83
8959--8987
15
1.9
15
100
0
58
31
27
13
27
1.94
8655--8972
26
12.3
26
94
1
523
35
24
14
25
1.93
8968--11017
26
79.2
26
91
4
3070
34
24
15
26
1.94
13196--13268
31
2.4
31
97
0
137
20
23
27
28
1.99
22152--22188
17
2.2
18
90
9
60
21
0
21
56
1.42
33978--34030
26
2.0
26
100
0
106
30
20
7
41
1.80
39337--39429
43
2.2
43
98
0
177
24
19
13
41
1.88
45209--45244
17
2.1
17
100
0
72
30
11
25
33
1.90
55303--55407
38
2.8
38
97
0
192
32
14
17
36
1.89
56529--56600
35
2.1
35
97
0
135
44
8
4
43
1.53
58797--58949
83
1.8
83
94
0
270
26
16
16
39
1.90
61995--62199
68
3.0
68
97
0
392
38
17
10
33
1.84
64761--64810
22
2.3
22
92
0
91
28
26
10
36
1.88
75781--75875
39
2.3
41
91
5
149
53
13
1
31
1.47

Tables:   1

The End!