Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01019668.1 Corchorus olitorius cultivar O-4 contig19701, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  37190

Tables:   1   

This is table  1  of  1  ( 11 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
21--68
25
1.9
25
87
8
71
10
18
33
37
1.85
199--239
21
1.9
22
85
5
57
14
17
24
43
1.86
2750--6664
855
4.6
858
91
2
6284
34
17
14
33
1.90
6294--6839
201
2.7
198
86
4
749
35
17
12
34
1.87
6493--8222
857
2.0
852
92
2
2880
34
17
14
33
1.90
7618--8542
320
2.9
319
90
3
1347
34
17
15
32
1.92
9120--9512
197
2.0
200
86
5
548
46
8
15
30
1.75
10382--10436
27
2.0
27
100
0
110
30
3
10
54
1.52
10467--10507
17
2.3
18
84
12
50
48
2
9
39
1.49
11050--11086
15
2.4
16
86
8
51
32
10
32
24
1.90
20399--20451
25
2.1
25
100
0
106
33
7
7
50
1.59

Tables:   1

The End!