Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01019709.1 Corchorus olitorius cultivar O-4 contig19742, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  34139

Tables:   1   

This is table  1  of  1  ( 17 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
5--1282
333
3.9
332
94
1
2190
34
17
14
33
1.91
1245--1415
84
2.0
84
98
0
333
30
19
18
30
1.96
13636--14048
221
1.9
217
92
3
693
39
19
17
23
1.92
14035--14380
172
2.0
173
89
2
534
36
23
15
23
1.94
14483--14534
18
2.8
18
94
2
86
25
17
38
19
1.93
16357--16385
14
2.1
14
100
0
58
51
6
13
27
1.66
22437--24129
867
2.0
850
88
6
2513
29
16
18
35
1.93
25294--25434
40
3.6
39
85
4
203
14
19
38
28
1.90
25519--25665
40
3.7
40
89
1
224
16
20
38
25
1.93
25519--25665
79
1.9
80
88
1
224
16
20
38
25
1.93
25279--25810
224
2.4
223
90
1
841
23
18
28
29
1.98
25595--25972
145
2.6
143
86
4
517
28
17
24
29
1.97
25595--25972
147
2.6
144
87
2
528
28
17
24
29
1.97
25595--26021
147
2.9
143
80
10
472
30
16
22
31
1.96
29296--29361
34
1.9
34
96
0
123
37
22
15
24
1.92
29738--34139
331
13.3
332
87
3
6130
33
17
15
33
1.91
29738--34139
997
4.4
996
87
4
6249
33
17
15
33
1.91

Tables:   1

The End!