Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01019713.1 Corchorus olitorius cultivar O-4 contig19746, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  134787

Tables:   1   

This is table  1  of  1  ( 31 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
596--653
21
2.9
19
84
5
71
36
17
12
34
1.87
735--786
21
2.6
19
84
6
68
32
21
9
36
1.86
530--784
139
1.8
140
92
0
431
29
21
14
33
1.94
791--902
57
2.0
57
89
0
170
33
33
16
16
1.92
1857--1881
3
8.3
3
100
0
50
0
32
0
68
0.90
29400--29463
33
1.9
33
96
0
119
28
17
6
48
1.71
36834--36867
17
1.9
18
94
5
61
47
11
0
41
1.40
36955--37002
17
2.8
18
84
12
66
45
10
2
41
1.50
37380--37531
73
2.1
74
97
1
288
30
9
9
50
1.67
42218--42279
29
2.1
30
85
5
83
41
12
24
20
1.87
43458--43482
1
25.0
1
100
0
50
0
0
0
100
0.00
54741--54781
1
41.0
1
100
0
82
100
0
0
0
0.00
56998--57040
20
2.2
20
91
0
68
34
16
6
41
1.75
64895--64929
18
1.9
18
94
0
61
57
0
8
34
1.29
72206--72244
15
2.6
15
87
0
51
33
5
38
23
1.77
72206--72244
18
2.2
18
100
0
78
33
5
38
23
1.77
73108--73188
40
2.0
40
100
0
162
27
22
20
29
1.99
80039--80076
2
19.0
2
100
0
76
50
0
0
50
1.00
83428--83466
3
12.0
3
84
15
51
33
2
2
61
1.23
83793--83832
2
20.5
2
89
5
64
52
2
0
45
1.14
93583--93621
19
2.1
19
95
0
69
20
25
10
43
1.83
107159--107202
19
2.3
19
96
0
79
11
15
11
61
1.57
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
107745--107773
12
2.4
12
100
0
58
34
37
10
17
1.84
114660--114686
14
1.9
14
100
0
54
44
7
3
44
1.49
125893--125982
42
2.1
42
81
0
99
38
32
12
16
1.86
128973--129092
61
2.0
61
96
0
222
24
25
25
25
2.00
130483--130517
16
2.2
16
100
0
70
45
17
25
11
1.81
130623--131062
41
10.6
41
85
4
544
38
18
13
29
1.89
130616--131035
167
2.5
167
89
2
607
39
17
14
29
1.88
131365--134693
667
5.1
665
88
2
4692
34
17
16
31
1.92
131365--134693
333
10.1
333
84
4
4180
34
17
16
31
1.92

Tables:   1

The End!