genome.fa.s19716.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01019716.1 Corchorus olitorius cultivar O-4 contig19749, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  210512

Tables:   1   

This is table  1  of  1  ( 59 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1--3658	333	11.2	330	82	7	3605	36	17	14	31	1.90
1--3658	988	3.7	982	82	6	3987	36	17	14	31	1.90
4718--4784	29	2.3	29	97	0	125	55	2	2	38	1.31
4888--4945	31	1.9	31	85	3	82	67	5	8	18	1.37
13125--13179	24	2.2	26	87	9	80	27	7	10	54	1.61
13352--13416	19	3.6	19	69	23	68	36	10	7	44	1.68
24598--24677	34	2.4	33	87	6	117	33	8	22	35	1.85
24612--24682	34	2.1	34	100	0	142	30	8	22	38	1.84
32351--32382	3	10.7	3	100	0	64	34	0	0	65	0.93
32879--32910	16	2.0	16	100	0	64	6	12	18	62	1.50
40308--40358	23	2.2	23	89	0	75	31	5	29	33	1.81
40372--40445	37	2.0	37	94	0	130	45	10	13	29	1.77
53148--53180	12	2.8	12	95	4	59	21	0	0	78	0.75
61622--61681	17	3.6	16	77	6	57	6	38	0	55	1.27
63452--63529	34	2.2	34	90	4	120	47	2	17	32	1.62
70833--70893	30	2.0	30	90	6	97	19	21	21	37	1.94
78776--78859	39	2.2	38	86	2	114	26	8	17	47	1.76
80600--80749	50	3.0	50	100	0	300	38	12	10	40	1.76
83772--83983	113	1.9	114	95	4	383	32	7	11	48	1.67
94681--94733	26	2.0	26	100	0	106	30	11	28	30	1.91
95054--95236	90	2.0	90	98	0	357	29	27	13	30	1.94
97293--97416	63	2.0	63	98	0	239	32	16	11	39	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
106423--106478	22	2.5	23	77	8	62	41	12	10	35	1.78
106502--106559	20	2.8	21	87	10	75	41	6	6	44	1.58
108236--111374	992	3.2	971	80	6	3183	36	15	13	33	1.88
108236--111409	318	9.6	327	79	7	3001	36	15	13	33	1.88
111727--111756	15	1.9	16	93	6	53	53	3	0	43	1.17
112395--112477	22	3.8	21	78	9	69	40	6	8	44	1.59
113550--113581	3	10.7	3	93	0	55	62	3	34	0	1.11
115616--115640	2	12.5	2	100	0	50	0	52	0	48	1.00
121100--121165	34	1.9	34	100	0	132	3	31	18	46	1.64
121166--121397	125	1.9	124	93	2	403	3	38	21	36	1.72
121166--121397	62	3.7	62	94	2	403	3	38	21	36	1.72
131358--131410	27	2.0	27	96	0	97	26	5	15	52	1.64
132633--132979	168	2.1	168	96	0	640	33	12	14	39	1.83
136684--136709	4	6.5	4	100	0	52	23	0	0	76	0.78
138419--138508	47	2.0	45	93	4	153	30	12	0	57	1.35
138844--139208	91	4.0	91	98	0	703	22	15	20	41	1.89
156409--156526	62	1.9	62	85	0	164	31	20	10	38	1.86
156391--156742	188	1.9	188	84	3	476	31	19	12	35	1.89
159337--159383	23	2.0	23	100	0	94	19	21	4	55	1.60
172821--172898	29	2.6	28	84	6	102	17	25	16	39	1.91
178654--178719	21	3.2	20	75	16	62	39	10	16	33	1.83
183023--183057	17	2.1	17	94	0	61	17	17	5	60	1.55
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
189691--189817	68	1.9	68	80	6	150	33	14	16	35	1.90
197426--197517	48	1.9	48	90	0	148	16	19	40	23	1.91
198414--198668	122	2.1	121	79	5	264	19	21	25	33	1.97
198668--198714	17	2.8	16	81	9	58	23	21	21	34	1.97
198622--198823	109	1.8	110	94	1	361	27	25	17	28	1.98
198780--198825	17	2.7	17	86	0	56	26	21	19	32	1.97
199731--199896	31	5.4	31	84	0	152	18	22	25	33	1.96
199743--199896	62	2.5	62	83	0	191	18	22	25	34	1.96
203529--205878	332	7.0	330	78	8	2348	32	15	16	35	1.90
204580--205876	682	1.9	675	83	6	1659	32	15	15	36	1.89
205981--206759	331	2.4	328	79	6	822	34	12	16	36	1.87
206160--207347	597	2.0	593	82	5	1450	32	13	16	36	1.89
206757--208378	331	4.9	330	83	4	1956	33	14	15	35	1.89
206801--208378	663	2.4	661	87	2	2299	33	14	15	35	1.88
208669--210512	332	5.6	326	77	11	1755	33	15	15	35	1.90

Tables:   1

The End!