genome.fa.s19748.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01019748.1 Corchorus olitorius cultivar O-4 contig19781, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  107816

Tables:   1   

This is table  1  of  1  ( 23 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12067--12114	21	2.3	21	78	7	53	10	20	43	25	1.83
19619--19666	15	2.9	16	75	19	53	16	10	8	64	1.48
19954--20006	23	2.3	23	86	0	70	56	5	9	28	1.54
24238--24276	17	2.2	19	90	9	64	33	5	20	41	1.74
30416--30446	13	2.4	13	94	0	53	16	0	29	54	1.42
30794--30843	19	2.7	19	76	14	59	46	0	2	52	1.12
34265--34302	3	13.3	3	83	10	53	63	0	0	36	0.95
34265--34298	14	2.4	14	95	0	59	61	0	0	38	0.96
39950--39984	17	2.1	17	94	0	61	37	2	5	54	1.39
53943--54006	29	2.2	30	86	8	96	23	28	9	39	1.86
55226--55298	31	2.4	31	92	0	119	27	21	16	34	1.95
59292--59316	7	3.6	7	100	0	50	88	12	0	0	0.53
61780--62249	233	2.0	233	100	0	940	34	18	13	33	1.90
64019--64377	180	2.0	180	100	0	718	42	17	12	27	1.85
71830--77023	881	5.9	882	94	1	8998	38	14	22	24	1.92
86142--86212	21	3.5	21	76	7	65	23	7	25	43	1.79
86582--86622	14	2.9	14	92	0	64	43	9	9	36	1.71
87480--87573	45	2.2	44	85	11	124	39	20	4	36	1.72
88604--88928	178	1.8	178	89	2	519	34	14	16	35	1.89
92039--92103	34	1.9	33	93	3	112	38	6	23	32	1.79
99700--99859	80	2.0	80	100	0	320	23	17	30	28	1.97
99885--99920	18	2.0	18	100	0	72	66	11	5	16	1.40
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
102385--102427	1	43.0	1	95	0	68	0	4	0	95	0.27

Tables:   1

The End!