Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01019887.1 Corchorus olitorius cultivar O-4 contig19920, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  63979

Tables:   1   

This is table  1  of  1  ( 28 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
6670--6696
2
13.5
2
100
0
54
51
0
0
48
1.00
6704--6762
29
2.0
29
100
0
118
47
6
13
32
1.69
7494--7530
8
4.5
8
96
3
65
37
0
0
62
0.96
8707--8750
2
22.0
2
100
0
88
50
0
0
50
1.00
9576--9762
22
8.5
22
71
12
109
39
11
15
34
1.83
9556--9637
42
1.9
43
82
2
103
45
9
20
24
1.81
9575--9653
21
3.7
21
81
10
79
43
11
17
27
1.84
9902--9967
15
4.5
15
70
11
55
39
7
9
43
1.65
9910--9965
29
1.9
29
82
7
69
35
5
10
48
1.61
9902--9989
44
2.0
44
82
4
106
35
6
12
45
1.69
15170--15282
57
2.0
57
89
0
172
18
26
22
32
1.97
27154--27190
3
13.3
3
83
16
53
64
0
0
35
0.94
29854--29885
15
2.1
15
94
0
55
46
3
34
15
1.62
33633--33719
43
2.0
43
97
0
165
18
21
19
40
1.92
33734--33777
15
2.9
15
86
10
63
50
0
50
0
1.00
36755--36819
27
2.4
27
92
0
103
24
1
16
56
1.49
37533--37585
16
3.2
16
78
5
61
5
39
1
52
1.36
39794--39869
2
40.0
2
77
15
81
44
3
1
50
1.29
39800--39872
31
2.4
32
86
8
100
43
2
1
52
1.24
39800--39872
29
2.4
30
86
8
96
43
2
1
52
1.24
40039--40064
13
2.0
13
100
0
52
23
23
15
38
1.92
42073--42114
2
21.0
2
100
0
84
50
0
0
50
1.00
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
44804--44913
37
3.0
37
93
0
184
41
31
5
20
1.75
46619--46670
27
1.9
27
92
0
86
21
32
19
26
1.97
47231--47270
21
1.9
21
94
0
71
20
37
0
42
1.52
47941--48075
66
2.0
66
92
0
225
42
19
15
22
1.89
61791--61816
11
2.4
11
100
0
52
53
26
7
11
1.63
63837--63866
10
2.9
10
95
5
51
66
0
33
0
0.92

Tables:   1

The End!