genome.fa.s20104.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01020104.1 Corchorus olitorius cultivar O-4 contig20137, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  157564

Tables:   1   

This is table  1  of  1  ( 49 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1985--2033	21	2.3	21	89	6	73	6	30	40	22	1.78
12842--12879	20	1.9	20	88	0	58	23	26	18	31	1.97
17460--17508	19	2.6	20	81	12	59	53	2	0	44	1.12
17994--18020	2	13.5	2	100	0	54	51	0	0	48	1.00
26331--26364	2	17.0	2	100	0	68	50	0	0	50	1.00
29902--29940	2	20.0	2	94	5	71	51	48	0	0	1.00
37092--37134	2	21.5	2	100	0	86	0	0	48	51	1.00
39332--39356	1	25.0	1	100	0	50	100	0	0	0	0.00
46026--46056	6	5.2	6	100	0	62	16	16	19	48	1.81
46421--46498	41	1.9	41	100	0	156	42	11	12	33	1.79
48406--48431	1	26.0	1	100	0	52	100	0	0	0	0.00
50449--50509	27	2.3	27	85	0	77	18	21	22	37	1.94
55117--55167	15	3.3	15	70	20	50	52	3	17	25	1.61
55111--55196	32	2.8	30	88	11	138	53	6	16	23	1.67
55106--55196	30	3.0	29	87	12	137	52	7	16	23	1.69
57743--57783	15	2.6	16	85	14	59	68	9	7	14	1.39
59162--59221	29	2.0	31	87	6	88	36	18	6	38	1.77
62860--62918	30	2.0	29	93	3	100	54	6	13	25	1.64
67606--67666	27	2.3	27	94	0	104	36	22	24	16	1.94
72773--72814	12	3.3	12	87	12	50	23	2	2	71	1.10
72814--72856	12	3.4	13	78	15	54	44	0	0	55	0.99
74096--74137	22	1.9	22	90	0	66	38	28	21	11	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
75301--75325	6	4.2	6	100	0	50	48	0	16	36	1.46
75625--75684	22	2.7	23	78	14	56	38	10	10	41	1.72
77071--77138	33	2.0	34	83	13	88	44	1	4	50	1.31
80882--80980	51	1.9	51	91	0	162	25	16	21	37	1.93
83422--83479	19	2.9	19	87	5	80	36	12	22	29	1.90
86063--86214	79	1.9	78	95	1	277	21	7	23	48	1.75
87941--88059	33	3.6	33	82	0	148	9	32	43	14	1.77
87954--88080	66	1.9	66	85	0	173	11	33	41	14	1.80
91580--91618	20	1.9	21	89	5	62	66	17	2	12	1.35
93715--93782	27	2.5	27	92	4	102	19	47	14	19	1.83
93726--93782	27	2.1	27	100	0	114	21	45	14	19	1.85
94207--94279	33	2.2	33	85	0	92	13	41	34	10	1.80
94683--94810	37	3.5	37	80	0	148	25	16	37	21	1.93
99532--99602	26	2.7	27	84	2	90	18	14	22	45	1.85
101840--101909	30	2.3	31	90	2	106	14	11	30	44	1.80
102650--102683	16	2.0	17	88	11	52	32	5	20	41	1.76
115417--115462	10	4.7	10	86	5	58	0	30	0	69	0.89
117095--117199	6	17.5	6	94	3	149	38	0	28	33	1.58
117146--117230	15	5.7	15	87	0	62	25	2	40	31	1.69
117201--117225	12	2.1	12	100	0	50	8	0	60	32	1.26
121784--122818	438	2.3	435	82	5	1200	42	12	13	31	1.81
123517--123632	59	2.0	59	96	0	214	30	23	12	34	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
124699--124854	80	2.0	80	87	3	226	34	10	30	24	1.90
136734--136773	2	20.5	2	85	14	57	47	0	2	50	1.14
138619--138649	3	10.3	3	100	0	62	32	0	0	67	0.91
144452--144487	16	2.2	16	90	0	54	41	8	19	30	1.81
150470--150563	47	2.0	49	89	4	147	25	4	28	41	1.74

Tables:   1

The End!