Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01020134.1 Corchorus olitorius cultivar O-4 contig20167, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  28315

Tables:   1   

This is table  1  of  1  ( 19 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2886--2967
38
2.2
37
95
4
146
15
25
18
40
1.90
3117--3222
42
2.5
42
89
0
149
36
11
12
39
1.79
6820--6897
35
2.2
35
93
0
129
33
24
25
16
1.96
6837--6911
35
2.1
35
85
0
96
40
24
18
17
1.91
9876--9905
15
2.0
15
100
0
60
40
13
26
20
1.89
17339--17408
7
10.3
7
86
4
81
8
15
1
74
1.13
18235--18285
21
2.4
21
86
3
66
68
13
1
15
1.30
18620--18680
6
9.7
6
92
7
95
85
14
0
0
0.60
18620--18680
13
4.8
13
92
8
99
85
14
0
0
0.60
19466--19631
66
2.5
66
96
0
296
39
13
12
34
1.82
19448--19983
22
24.2
22
71
10
234
36
11
17
34
1.87
19867--20010
22
6.6
21
75
9
74
32
13
15
37
1.88
21746--21923
22
8.0
21
67
14
72
41
11
13
33
1.81
22003--22354
22
15.6
22
70
11
122
33
11
17
37
1.86
22118--22354
44
5.3
44
74
10
176
31
11
17
39
1.86
22118--22292
91
1.9
92
80
5
203
32
12
16
39
1.85
22923--22969
21
2.2
21
100
0
94
29
23
4
42
1.73
23802--23841
19
2.1
19
90
0
62
37
20
2
40
1.66
24014--24266
130
1.9
130
94
0
443
45
12
14
27
1.80

Tables:   1

The End!