Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01020185.1 Corchorus olitorius cultivar O-4 contig20218, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  65811

Tables:   1   

This is table  1  of  1  ( 25 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
163--277
56
2.0
57
96
1
214
33
26
1
39
1.66
343--423
42
1.9
42
92
0
135
30
6
14
48
1.69
3648--3678
13
2.3
14
94
5
55
61
0
0
38
0.96
3880--3973
45
2.2
43
86
7
129
39
22
3
35
1.70
5638--5709
31
2.3
31
75
17
78
61
8
4
26
1.43
12370--12429
27
2.2
28
93
3
104
46
21
16
15
1.83
18595--18627
14
2.5
13
90
9
57
18
0
0
81
0.68
20903--20955
17
3.2
16
79
15
56
30
1
20
47
1.61
20799--20946
76
1.9
76
91
0
242
38
4
16
40
1.68
22471--22577
56
1.9
55
85
9
146
28
21
14
35
1.93
24787--25164
178
2.1
178
83
3
476
36
15
14
33
1.88
29236--29266
15
2.1
15
100
0
62
12
32
12
41
1.81
29666--29724
29
2.0
29
93
0
100
22
33
18
25
1.96
29862--30005
47
3.1
46
91
2
227
6
23
21
48
1.72
29887--29976
18
5.4
18
74
22
88
6
23
21
48
1.73
33433--33500
29
2.6
24
77
20
82
32
20
22
25
1.98
37717--37760
4
11.8
4
81
13
58
2
0
20
77
0.88
37715--37760
18
2.5
19
96
3
85
2
0
19
78
0.86
37721--37749
14
2.1
14
100
0
58
0
0
20
79
0.74
45451--45484
1
34.0
1
100
0
68
0
0
0
100
0.00
50597--50630
16
2.1
16
94
0
59
17
29
2
50
1.61
52673--52808
68
2.0
68
94
0
236
36
23
12
27
1.91
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
60189--60216
2
14.0
2
100
0
56
50
0
0
50
1.00
61109--61157
17
2.9
16
85
8
62
22
20
22
34
1.97
64613--64642
5
6.0
5
96
0
51
76
0
23
0
0.78

Tables:   1

The End!