Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01020352.1 Corchorus olitorius cultivar O-4 contig20385, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  29653

Tables:   1   

This is table  1  of  1  ( 26 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
3832--3904
31
2.4
31
100
0
146
52
10
8
28
1.65
5702--5993
152
2.0
149
93
3
507
42
8
11
38
1.71
6014--6055
8
5.1
8
91
2
66
50
0
21
28
1.49
6016--6060
8
5.3
9
89
2
51
48
0
22
28
1.50
10389--10418
5
6.0
5
92
0
51
0
16
0
83
0.65
14380--14406
14
1.9
14
100
0
54
37
0
11
51
1.37
16398--16436
14
2.9
13
80
3
51
53
2
2
41
1.28
17465--17493
13
2.2
13
100
0
58
31
17
0
51
1.45
17800--17837
20
1.9
20
84
10
51
10
15
2
71
1.25
18773--18817
22
2.1
21
84
12
56
62
2
0
35
1.08
19376--19419
23
1.9
23
81
9
54
61
0
13
25
1.32
19425--19484
23
2.4
26
72
10
63
46
0
11
41
1.40
19367--19572
105
2.0
103
89
6
319
50
1
12
35
1.49
19481--19512
8
4.2
8
84
15
50
65
0
9
25
1.22
20248--20309
25
2.6
24
82
5
72
59
3
4
32
1.34
23694--23745
27
2.0
26
85
10
72
57
9
9
23
1.60
24739--24791
21
2.5
21
87
3
79
28
15
11
45
1.80
26026--26072
3
16.0
3
91
4
78
36
0
0
63
0.94
26027--26105
6
13.3
6
95
1
61
49
0
0
50
1.00
26065--26107
3
14.3
3
95
0
77
65
0
0
34
0.93
26401--26481
22
3.6
22
73
12
67
41
9
14
33
1.79
26411--26481
23
3.1
23
67
15
58
46
8
11
33
1.70
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
26561--26637
22
3.5
21
78
3
82
38
10
11
38
1.76
26544--26638
44
2.2
44
84
1
138
38
10
13
36
1.80
26451--26683
65
3.6
64
73
8
184
41
10
13
35
1.78
26669--26723
22
2.5
22
75
0
56
36
10
14
38
1.81

Tables:   1

The End!