genome.fa.s20396.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01020396.1 Corchorus olitorius cultivar O-4 contig20429, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  256492

Tables:   1   

This is table  1  of  1  ( 67 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1--1856	331	5.7	326	75	9	1348	37	14	13	34	1.86
2217--2246	15	1.9	16	93	6	53	53	3	0	43	1.17
2503--2601	8	12.2	8	83	14	132	54	0	21	24	1.45
2531--2589	26	2.3	23	100	0	64	57	0	18	23	1.40
3336--3464	62	2.1	62	100	0	258	30	14	12	42	1.83
36135--36185	25	2.0	25	100	0	102	13	15	27	43	1.85
39909--39943	2	17.5	2	100	0	70	0	48	0	51	1.00
47138--47215	29	2.7	29	79	2	84	43	28	10	17	1.82
50999--51039	20	2.0	20	100	0	82	58	14	9	17	1.62
52060--52120	30	2.0	30	87	0	86	26	27	4	40	1.76
58242--58356	57	2.0	57	100	0	230	19	24	26	29	1.98
58863--58909	20	2.3	20	86	13	69	4	29	0	65	1.11
58863--58909	19	2.3	20	85	14	69	4	29	0	65	1.11
58854--58901	19	2.5	20	90	10	73	6	25	0	68	1.12
61013--61096	16	5.6	15	77	17	68	71	0	2	26	0.98
61017--61091	29	2.6	27	76	14	69	70	0	2	26	1.00
68962--69193	31	7.5	31	89	0	311	34	26	21	16	1.95
69621--69775	79	2.0	77	91	2	247	27	26	20	25	1.99
96101--96134	8	4.0	8	85	14	50	23	23	0	52	1.47
96376--96405	15	1.9	16	93	6	53	43	0	3	53	1.17
96893--100553	995	3.7	982	76	10	2588	33	13	15	37	1.87
96892--100554	663	5.5	659	77	9	2886	33	13	15	37	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
100642--100727	8	10.8	8	87	0	73	3	9	40	46	1.53
100642--100727	10	8.6	10	81	0	73	3	9	40	46	1.53
100659--100727	18	3.8	18	92	0	111	0	11	37	50	1.39
100656--100730	8	8.9	8	84	11	87	0	12	38	49	1.40
114103--114154	25	2.1	25	100	0	104	36	25	11	26	1.90
120576--120607	15	2.1	15	100	0	64	37	0	12	50	1.41
120531--120655	54	2.3	55	92	4	207	35	1	11	52	1.47
120572--120655	27	3.1	27	63	19	66	33	1	11	53	1.45
121202--121273	3	24.0	3	100	0	144	66	0	0	33	0.92
122910--122967	18	3.2	18	75	0	62	41	0	48	10	1.37
122907--122977	24	3.0	24	73	8	81	43	0	47	8	1.33
132882--132915	3	11.3	3	93	0	59	64	35	0	0	0.94
135854--135880	3	9.0	3	100	0	54	0	0	33	66	0.92
139383--139408	2	13.0	2	100	0	52	50	0	0	50	1.00
143040--143065	2	13.0	2	100	0	52	50	0	0	50	1.00
146701--146735	17	1.9	19	88	11	56	45	14	8	31	1.75
157263--157349	43	2.0	43	86	4	122	33	14	13	37	1.86
166304--166397	49	1.9	49	100	0	188	17	28	11	42	1.84
187064--187198	68	2.0	68	100	0	270	45	17	16	20	1.86
194262--194286	13	1.9	13	100	0	50	40	8	16	36	1.77
194756--194815	29	2.1	29	100	0	120	30	16	20	33	1.94
204975--205033	2	30.0	2	87	3	84	44	1	3	50	1.28
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
205195--205409	109	2.0	109	92	0	358	44	15	9	30	1.78
207338--207373	2	18.0	2	100	0	72	50	0	0	50	1.00
209182--209226	1	45.0	1	86	0	63	0	6	0	93	0.35
209182--209226	12	3.8	12	91	2	74	0	6	0	93	0.35
223287--223457	60	2.9	59	77	10	170	32	18	18	29	1.95
223506--223660	60	2.6	60	82	6	188	31	18	16	34	1.93
224487--224804	162	2.0	153	84	6	413	16	14	17	51	1.76
232930--232988	30	1.9	30	86	3	82	33	5	10	50	1.58
232968--233011	22	2.0	23	86	8	65	9	4	15	70	1.30
236245--236299	21	2.6	21	88	0	74	16	49	21	12	1.79
238748--238775	12	2.3	12	100	0	56	7	14	7	71	1.29
247160--247768	22	27.8	22	69	14	160	36	15	9	38	1.80
247578--247623	23	2.0	23	91	0	74	28	15	8	47	1.74
247840--248256	22	18.9	22	70	13	207	34	17	9	38	1.83
247815--248442	44	14.4	42	66	17	154	35	16	9	38	1.82
248269--248489	68	3.3	66	80	3	187	37	17	8	36	1.81
248256--248486	22	10.5	22	70	13	118	36	16	8	37	1.80
248789--248873	44	1.9	44	95	4	154	52	1	8	37	1.39
249450--249495	23	2.0	24	95	4	85	30	6	15	47	1.70
252058--252148	42	2.2	42	88	2	130	36	4	18	40	1.71
252354--252397	15	2.6	17	82	17	56	43	0	2	54	1.12
252675--252798	45	2.8	45	93	0	212	39	21	6	32	1.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
252660--252800	45	3.2	45	88	4	209	38	21	5	34	1.77

Tables:   1

The End!