Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01020710.1 Corchorus olitorius cultivar O-4 contig20743, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  11367

Tables:   1   

This is table  1  of  1  ( 13 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
19--65
23
2.0
23
100
0
94
27
8
25
38
1.85
2851--3680
320
2.6
315
81
7
884
37
15
14
32
1.88
2851--3683
329
2.6
320
80
8
891
37
15
14
32
1.88
3690--5631
332
5.9
328
78
8
1665
36
15
14
34
1.88
5642--8126
332
7.5
330
75
9
1796
36
14
14
33
1.87
6798--7981
319
3.6
323
77
9
939
36
14
15
33
1.88
8486--8515
15
1.9
16
93
6
53
56
0
0
43
0.99
8475--8541
35
1.9
34
85
8
91
55
0
2
41
1.15
8776--8813
13
2.9
13
77
14
51
60
0
15
23
1.35
9149--9292
22
6.2
21
75
17
101
38
13
8
39
1.75
9149--9290
73
1.9
73
83
10
184
38
14
7
40
1.74
9193--9251
29
2.0
29
87
6
84
44
8
8
38
1.65
9222--9319
21
4.5
21
77
11
83
32
14
9
43
1.77

Tables:   1

The End!