Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01020715.1 Corchorus olitorius cultivar O-4 contig20748, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  9351

Tables:   1   

This is table  1  of  1  ( 8 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
3108--3139
2
16.0
2
100
0
64
50
0
0
50
1.00
3217--3256
19
2.0
21
85
9
57
62
0
2
35
1.09
3217--3259
11
4.2
10
88
11
52
62
0
2
34
1.08
3447--4623
332
3.5
331
83
3
1452
34
16
15
32
1.91
4887--4919
15
2.2
15
100
0
66
33
30
15
21
1.94
5670--5699
15
1.9
16
93
6
53
43
0
3
53
1.17
6069--7986
338
5.8
328
73
10
1329
34
14
14
36
1.87
6088--7386
666
1.9
663
81
7
1538
34
14
13
36
1.86

Tables:   1

The End!