genome.fa.s20724.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01020724.1 Corchorus olitorius cultivar O-4 contig20757, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  156913

Tables:   1   

This is table  1  of  1  ( 47 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1940--1976	2	19.0	2	94	5	67	48	0	0	51	1.00
4006--4103	48	2.0	48	94	0	169	51	15	3	30	1.59
11829--11874	24	1.9	24	100	0	92	43	6	32	17	1.75
12687--12793	54	2.0	54	98	0	205	42	11	24	22	1.86
12747--12820	36	2.1	36	94	0	130	47	10	21	20	1.80
13245--13280	18	2.0	18	88	0	54	25	36	2	36	1.70
13355--13401	22	2.1	22	92	0	76	17	42	10	29	1.82
14430--14531	39	2.6	40	93	4	172	19	8	18	52	1.71
15113--15249	45	3.1	45	97	1	258	31	8	10	48	1.69
16550--16618	35	2.0	35	100	0	138	31	8	23	36	1.85
34052--34089	19	2.1	18	85	14	51	65	2	0	31	1.06
33822--34301	251	1.9	252	92	0	800	35	17	20	27	1.95
37983--38011	2	14.5	2	100	0	58	0	0	48	51	1.00
40254--40292	3	12.7	3	89	5	60	0	28	0	71	0.86
47379--47587	67	3.1	66	83	4	260	24	18	20	36	1.94
50763--50805	21	2.0	21	86	0	59	18	46	6	27	1.75
51155--51215	28	2.2	28	85	8	81	11	42	36	9	1.74
53163--53193	2	15.5	2	100	0	62	51	0	0	48	1.00
54450--54574	41	3.0	41	98	1	241	53	14	16	15	1.73
58407--58593	68	2.8	68	99	0	365	32	18	14	34	1.92
58632--58710	40	2.0	40	100	0	158	58	7	15	18	1.60
59008--59091	41	2.0	42	95	2	152	29	20	9	40	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
64056--68690	319	14.4	319	82	6	4712	35	16	14	33	1.89
64056--69709	642	8.7	640	80	8	5311	35	16	14	33	1.89
68631--68742	56	2.0	57	92	3	190	28	16	8	46	1.77
68689--69713	323	3.2	320	86	3	1339	34	16	14	34	1.89
69654--69764	55	2.0	56	91	5	179	28	16	9	45	1.77
69712--70546	324	2.6	322	83	5	978	34	18	14	33	1.91
70546--72101	25	58.2	25	84	10	1737	32	22	14	30	1.93
70790--70839	16	3.2	16	67	16	50	38	16	14	32	1.88
70546--72103	156	9.7	152	87	7	1802	32	22	14	30	1.93
70546--72102	206	7.3	202	87	8	1640	33	22	14	30	1.93
71883--72103	57	4.0	57	88	6	330	31	21	15	31	1.95
83031--83073	23	1.9	23	85	4	61	55	13	13	16	1.69
85909--85946	2	19.0	2	100	0	76	50	0	0	50	1.00
95188--95212	2	12.5	2	100	0	50	52	0	0	48	1.00
95454--95497	2	22.0	2	100	0	88	50	0	0	50	1.00
101050--101220	85	2.0	87	87	4	249	35	10	13	40	1.79
105962--106068	53	2.0	54	87	3	153	33	23	17	25	1.96
106176--106262	45	1.9	45	100	0	174	28	18	18	34	1.95
111849--112128	140	2.0	140	100	0	560	34	9	16	40	1.80
112444--112621	31	5.8	31	83	0	187	17	23	25	34	1.96
117107--117437	182	1.8	180	89	2	520	27	24	14	33	1.94
120565--120615	17	3.1	16	86	8	66	35	21	21	21	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
136471--136510	21	2.1	19	86	13	55	20	27	15	37	1.92
142147--142188	14	3.0	14	100	0	84	28	35	0	35	1.58
147953--147984	16	2.0	16	93	0	55	43	12	9	34	1.75

Tables:   1

The End!