Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01020741.1 Corchorus olitorius cultivar O-4 contig20774, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  44173

Tables:   1   

This is table  1  of  1  ( 20 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
14258--14308
5
10.8
5
83
12
72
21
17
0
60
1.36
14914--15585
322
2.1
325
86
3
944
32
16
17
33
1.92
15463--15724
130
2.0
131
90
1
418
30
16
22
29
1.96
15593--16295
326
2.2
328
97
1
1315
33
13
19
33
1.91
16560--17369
315
2.5
316
82
5
921
34
15
17
33
1.91
16297--18246
876
2.2
870
92
2
3182
33
14
16
35
1.90
17435--18568
320
3.5
318
87
4
1490
33
14
17
33
1.91
19169--19426
129
2.0
129
88
4
387
30
17
22
29
1.97
20178--20438
131
2.0
131
90
2
409
31
16
23
29
1.96
20645--21509
323
2.6
323
81
8
952
32
15
16
35
1.90
24571--27867
330
10.0
329
77
9
2717
37
15
13
33
1.87
28360--28396
2
19.0
2
84
15
51
51
0
2
45
1.15
29944--30637
351
2.0
351
87
0
1010
32
16
18
31
1.93
33225--33291
6
11.5
6
78
12
68
0
20
0
79
0.74
33227--33319
41
2.2
41
84
5
116
0
23
2
74
0.93
36841--36881
21
2.0
21
100
0
82
19
34
14
31
1.92
40422--40458
18
2.1
18
94
0
65
32
21
8
37
1.83
41040--41113
29
2.4
30
84
8
96
31
27
10
31
1.91
41203--41235
12
2.8
12
90
9
50
6
0
27
66
1.15
41362--41458
31
3.2
28
78
16
97
38
10
21
29
1.87

Tables:   1

The End!