genome.fa.s20782.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01020782.1 Corchorus olitorius cultivar O-4 contig20815, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  141183

Tables:   1   

This is table  1  of  1  ( 27 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1370--2114	323	2.3	322	82	6	865	35	13	16	34	1.88
228--2630	881	2.7	879	88	4	3515	33	13	16	36	1.87
1610--3178	558	2.8	558	86	5	2042	33	13	16	37	1.87
3168--3212	23	1.9	23	86	4	63	55	0	11	33	1.35
2733--3508	322	2.4	317	82	7	848	33	14	15	36	1.89
3675--4146	232	2.0	236	92	1	790	33	12	16	36	1.87
4410--8204	884	4.3	881	91	2	6045	32	14	16	36	1.89
8202--8227	12	2.2	12	100	0	52	46	7	0	46	1.31
26253--26409	81	1.9	81	85	5	219	34	21	14	29	1.93
35121--35156	13	2.8	13	86	0	54	16	41	8	33	1.78
57586--57616	2	15.5	2	100	0	62	48	0	0	51	1.00
60748--60777	2	15.0	2	100	0	60	50	0	0	50	1.00
60776--60802	14	1.9	14	100	0	54	51	0	14	33	1.43
67783--67813	2	15.5	2	100	0	62	51	0	0	48	1.00
76298--76353	28	2.0	29	89	3	87	19	19	3	57	1.56
78238--78295	19	2.9	19	87	5	80	29	22	12	36	1.90
103602--103626	3	8.3	3	100	0	50	32	0	0	68	0.90
106176--106493	161	2.0	161	90	1	503	30	8	17	43	1.80
125570--125609	19	2.1	19	100	0	80	30	20	0	50	1.49
127440--127469	15	1.9	16	93	6	53	43	0	3	53	1.17
127820--132648	333	14.6	329	76	8	3891	33	14	15	36	1.88
129245--132641	332	10.2	329	76	8	2662	33	14	15	36	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
127820--132842	663	7.6	663	76	8	4092	33	14	15	36	1.88
134452--135234	311	2.5	316	79	9	835	33	15	16	34	1.90
135332--136161	325	2.5	325	84	4	1035	33	15	16	34	1.91
133571--137111	906	4.0	894	89	4	5302	33	14	16	36	1.88
136238--137476	325	3.7	331	78	9	839	33	14	15	35	1.89

Tables:   1

The End!