Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01020785.1 Corchorus olitorius cultivar O-4 contig20818, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  54763

Tables:   1   

This is table  1  of  1  ( 18 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1560--1612
2
27.5
2
84
7
65
45
1
3
49
1.31
1803--1880
8
9.8
8
71
10
52
43
10
7
38
1.67
2006--2155
8
19.5
8
69
9
62
46
10
4
39
1.56
2024--2155
2
68.0
2
71
5
65
46
9
3
40
1.54
2548--2648
49
2.1
49
100
0
202
37
7
15
38
1.77
21960--21994
13
2.8
12
87
12
52
20
0
2
77
0.90
31629--31764
66
2.1
66
97
0
254
27
14
15
41
1.86
32660--32793
67
2.0
67
98
0
259
35
14
21
28
1.93
34682--35629
481
2.0
474
97
1
1797
29
14
18
38
1.90
43699--43724
2
13.0
2
100
0
52
50
0
0
50
1.00
45004--45759
321
2.3
320
84
4
914
35
17
14
32
1.90
47292--48439
323
3.5
323
88
3
1500
34
16
15
34
1.90
47961--50645
556
4.8
553
81
7
3055
35
16
14
33
1.89
49411--49887
237
2.0
236
90
0
738
32
15
17
34
1.91
50170--51273
323
3.4
318
83
5
1147
33
16
14
34
1.90
50966--52389
555
2.6
554
86
3
1945
36
15
14
33
1.88
52565--54350
324
5.4
324
74
11
1455
34
15
16
33
1.90
53576--54350
320
2.4
316
86
3
1011
33
15
16
34
1.90

Tables:   1

The End!