Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01020792.1 Corchorus olitorius cultivar O-4 contig20825, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  80756

Tables:   1   

This is table  1  of  1  ( 17 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1--1138
323
3.5
321
83
5
1358
33
16
15
34
1.90
1535--1611
29
2.5
31
85
6
113
29
28
12
28
1.94
1535--1654
31
4.0
29
78
8
89
29
26
13
30
1.94
1915--1972
29
1.9
30
86
6
82
27
13
24
34
1.93
2588--3696
318
3.4
318
86
4
1318
34
16
15
33
1.91
3774--4596
321
2.5
318
82
6
944
33
16
15
34
1.90
5091--5151
30
2.1
30
81
3
70
60
6
8
24
1.49
5244--5268
13
1.9
13
100
0
50
56
0
20
24
1.43
10128--10175
23
2.0
24
84
11
64
56
16
10
16
1.67
19021--19045
11
2.3
11
100
0
50
44
28
8
20
1.79
19192--19251
29
2.1
29
100
0
120
45
3
30
21
1.68
46648--46729
41
2.0
42
88
7
123
13
12
8
65
1.46
46765--46810
3
15.3
3
100
0
92
67
0
0
32
0.91
50735--50817
44
1.9
43
90
2
130
48
6
26
19
1.72
53758--53783
4
6.5
4
100
0
52
50
0
0
50
1.00
56544--56607
28
2.3
27
76
12
67
39
17
4
39
1.70
77043--80737
336
11.2
332
82
6
4050
35
17
14
32
1.90

Tables:   1

The End!