Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01020833.1 Corchorus olitorius cultivar O-4 contig20866, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  64551

Tables:   1   

This is table  1  of  1  ( 17 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1--2357
320
7.3
321
85
4
2955
33
13
17
35
1.89
2116--2597
241
2.0
240
87
2
691
32
12
19
35
1.89
1796--2918
561
2.0
560
91
2
1837
32
13
18
34
1.90
2357--7902
323
17.4
321
86
4
7190
33
14
17
35
1.90
7904--9132
318
3.9
317
79
7
1183
31
15
17
35
1.91
7907--9174
635
2.0
634
80
5
1432
32
15
17
35
1.91
9685--9713
15
1.9
15
100
0
58
55
13
13
17
1.70
10340--10416
36
2.1
36
95
0
136
35
20
18
25
1.95
11449--11477
7
4.1
7
100
0
58
72
27
0
0
0.85
11907--12083
52
3.4
51
94
3
309
27
19
16
36
1.93
25285--25343
30
2.0
30
96
0
109
47
3
25
23
1.67
26738--26818
35
2.3
35
97
0
153
13
29
16
40
1.86
34621--34665
18
2.4
18
85
7
54
2
24
2
71
1.09
43510--43584
31
2.4
31
80
4
80
25
24
14
36
1.93
43849--43918
29
2.3
30
80
7
79
30
12
25
31
1.93
54604--54650
23
2.0
23
91
0
76
23
4
25
46
1.70
54732--54799
29
2.3
30
84
2
93
29
16
11
42
1.83

Tables:   1

The End!