Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01020837.1 Corchorus olitorius cultivar O-4 contig20870, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  34837

Tables:   1   

This is table  1  of  1  ( 15 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2539--2604
31
2.1
31
94
0
114
7
12
21
59
1.57
2841--2882
21
2.0
21
100
0
84
42
19
14
23
1.87
3623--3684
30
2.1
30
100
0
124
53
3
24
19
1.60
16053--16103
23
2.2
23
100
0
102
7
3
11
76
1.13
16064--16115
23
2.3
23
82
0
59
11
3
15
69
1.32
18238--18278
21
2.0
21
85
9
57
65
2
4
26
1.25
18231--18288
29
2.0
29
82
0
71
67
3
5
24
1.27
18642--18690
16
3.1
16
71
11
55
2
16
14
67
1.33
24461--26465
659
3.0
656
88
3
2879
36
16
14
32
1.89
24461--26465
332
6.1
330
81
5
2272
36
16
14
32
1.89
25953--26985
516
2.0
517
91
1
1671
36
17
14
31
1.90
25625--27312
847
2.0
842
82
5
2037
36
16
14
32
1.89
26539--27564
327
3.1
327
80
6
1223
36
16
14
32
1.89
27941--34447
989
6.6
982
80
6
6455
36
16
14
33
1.88
34690--34728
15
2.6
15
84
8
53
53
2
0
43
1.14

Tables:   1

The End!