Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01020866.1 Corchorus olitorius cultivar O-4 contig20899, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  103437

Tables:   1   

This is table  1  of  1  ( 28 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
3--30
2
14.0
2
100
0
56
50
0
0
50
1.00
7820--8037
72
3.0
72
91
0
348
23
18
26
31
1.97
12532--12573
2
22.5
2
83
13
54
57
0
0
42
0.99
13895--13921
2
13.5
2
100
0
54
51
0
0
48
1.00
14646--14703
21
2.7
23
82
12
61
55
12
1
31
1.47
16503--16551
24
2.0
24
84
7
64
24
12
20
42
1.86
20798--20822
13
1.9
13
100
0
50
12
16
8
64
1.49
21244--21385
68
2.1
68
90
0
221
40
26
10
23
1.87
24392--24422
15
2.0
16
93
6
55
45
3
38
12
1.59
27971--28135
56
2.9
57
92
3
273
38
21
0
40
1.54
29622--29702
42
1.9
42
97
0
153
29
7
16
46
1.73
48684--48713
15
2.0
15
100
0
60
46
13
13
26
1.80
50742--50818
39
2.0
39
94
0
136
42
9
12
35
1.75
53672--53849
89
2.0
89
100
0
356
39
7
10
42
1.68
75700--75732
2
16.5
2
100
0
66
51
0
0
48
1.00
78224--78272
22
2.2
22
92
0
80
24
10
12
53
1.69
78591--78653
30
2.1
30
82
5
74
31
19
3
46
1.65
83115--83169
24
2.3
24
90
6
85
23
5
45
25
1.74
83115--83185
24
3.0
24
85
4
72
22
7
45
25
1.77
84734--84825
9
9.5
10
82
15
106
0
20
18
60
1.36
84738--84829
30
3.1
30
90
6
136
0
22
17
59
1.37
84740--84829
39
2.3
40
90
7
141
0
22
17
60
1.37
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
85014--85055
16
2.6
16
100
0
84
47
16
11
23
1.80
94880--94924
23
2.0
23
81
0
54
15
4
26
53
1.61
96050--97029
334
3.0
322
78
7
1035
34
17
15
32
1.92
98300--99100
332
2.5
324
80
6
839
33
16
15
34
1.90
98790--100199
544
2.6
544
82
4
1577
33
19
15
32
1.93
100871--103437
332
7.8
332
89
2
3738
34
17
15
32
1.91

Tables:   1

The End!