Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01020870.1 Corchorus olitorius cultivar O-4 contig20903, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  51217

Tables:   1   

This is table  1  of  1  ( 15 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1--1594
427
3.7
427
94
0
2692
25
17
25
31
1.97
4000--4222
113
2.0
113
90
0
356
45
19
15
19
1.86
6237--6274
19
2.0
19
89
0
58
36
42
0
21
1.53
12751--12789
5
7.8
5
88
0
60
5
61
12
20
1.50
12749--12789
15
2.7
15
100
0
82
7
60
12
19
1.54
16742--16845
31
3.4
30
81
5
102
29
21
14
34
1.93
25572--25601
13
2.2
14
94
5
53
16
26
30
26
1.97
27272--27317
23
2.0
24
83
12
60
15
13
21
50
1.78
35055--35092
2
19.0
2
100
0
76
50
0
0
50
1.00
44855--46967
323
6.5
323
88
2
2863
31
16
17
33
1.93
44925--46967
647
3.2
642
88
3
2870
32
16
17
33
1.92
46763--47178
211
2.0
212
92
1
701
27
20
16
35
1.94
46112--47822
858
2.0
857
93
0
2913
31
17
17
33
1.93
46969--51131
323
13.0
323
90
2
6358
32
16
17
34
1.92
51172--51217
2
23.0
2
100
0
92
50
0
0
50
1.00

Tables:   1

The End!