Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01020976.1 Corchorus olitorius cultivar O-4 contig21009, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  15928

Tables:   1   

This is table  1  of  1  ( 17 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
46--1056
512
2.0
512
86
1
1416
37
11
14
36
1.83
5507--5538
9
3.6
9
100
0
64
12
0
56
31
1.37
6298--6341
21
2.1
21
82
0
52
43
0
6
50
1.29
5535--8638
486
6.4
488
83
4
3917
35
11
14
38
1.83
5536--8588
942
3.2
941
83
6
3661
35
11
14
38
1.82
10793--10845
12
4.3
13
81
9
58
26
18
13
41
1.87
12113--12189
29
2.6
31
91
6
124
41
10
10
37
1.74
12307--12500
97
2.0
97
94
2
345
42
17
12
27
1.86
12490--12531
19
2.2
19
86
4
57
52
19
4
23
1.65
12658--12732
31
2.5
30
86
4
98
49
10
16
24
1.76
12862--12944
33
2.6
31
84
3
103
38
13
10
37
1.79
13608--13653
20
2.3
20
100
0
92
63
4
0
32
1.14
13608--13654
10
4.7
10
81
0
58
61
4
0
34
1.15
13964--14077
60
1.9
60
87
0
165
37
14
16
31
1.88
13964--14104
31
4.6
31
79
5
135
38
13
15
32
1.87
14223--14289
31
2.2
31
92
5
111
20
19
11
47
1.81
14788--15103
128
2.6
119
79
9
343
37
18
19
23
1.94

Tables:   1

The End!