Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01021026.1 Corchorus olitorius cultivar O-4 contig21059, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  41516

Tables:   1   

This is table  1  of  1  ( 22 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
688--1218
54
9.9
54
86
4
668
27
18
6
47
1.74
678--1225
108
5.1
108
86
5
736
27
17
7
47
1.74
15521--15575
27
2.1
27
86
10
78
16
25
21
36
1.94
16028--16069
2
21.0
2
95
0
75
47
0
2
50
1.14
19695--20039
33
10.6
33
65
15
137
50
2
19
28
1.58
19841--19889
25
1.9
25
83
4
62
61
2
16
20
1.44
19871--19924
17
3.2
17
73
5
56
61
1
18
18
1.44
19945--20039
34
2.9
33
81
6
113
48
1
17
32
1.55
19959--20093
34
3.9
33
76
14
96
48
0
18
32
1.48
21401--21450
20
2.5
21
83
9
68
18
8
18
56
1.65
27225--27595
54
6.9
54
90
3
561
25
20
6
47
1.74
27227--27595
161
2.3
162
89
3
557
25
20
6
47
1.75
27565--27624
29
2.1
29
93
0
102
36
16
6
40
1.75
27511--27670
83
1.9
83
92
5
270
30
20
5
43
1.74
27594--27887
54
5.5
53
86
5
385
30
18
4
47
1.67
27457--27724
137
2.0
137
89
1
412
30
19
4
44
1.72
27403--27787
191
2.0
192
88
4
573
29
19
5
45
1.72
27594--27887
162
1.8
162
88
2
448
30
18
4
47
1.67
28509--28655
76
1.9
76
94
0
258
27
38
19
14
1.91
31580--31679
51
2.0
51
89
0
155
46
13
3
38
1.58
37399--37423
11
2.3
11
100
0
50
20
16
20
44
1.87
38172--38275
23
4.5
23
100
0
208
28
24
25
22
1.99

Tables:   1

The End!