Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01021088.1 Corchorus olitorius cultivar O-4 contig21121, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  80758

Tables:   1   

This is table  1  of  1  ( 21 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2434--2709
141
2.0
142
87
0
401
36
14
15
32
1.88
7639--7669
16
1.9
16
93
0
53
48
0
3
48
1.17
18982--19170
38
5.1
38
73
11
192
36
15
15
32
1.89
18954--19174
111
2.0
111
99
0
433
36
16
15
31
1.90
23218--23266
22
2.2
22
96
0
89
55
22
4
18
1.60
32751--32847
18
5.4
18
63
0
59
17
11
51
19
1.75
32739--32893
36
4.3
36
86
3
222
16
9
56
16
1.65
32885--33094
99
2.1
99
94
1
368
24
16
42
16
1.88
33210--33249
6
6.7
6
97
0
71
12
0
70
17
1.18
37507--37531
12
2.1
12
100
0
50
24
8
8
60
1.52
47222--47402
91
2.0
91
98
0
353
39
17
24
19
1.92
49344--49380
14
2.8
13
88
11
58
37
0
8
54
1.30
49420--49489
29
2.4
29
82
0
95
21
28
24
25
1.99
53436--53652
111
2.0
111
91
0
353
41
14
13
30
1.85
53624--53689
31
2.1
31
91
0
105
37
22
9
30
1.85
57607--57709
51
2.0
50
85
5
136
26
13
21
38
1.90
60514--60549
18
2.0
18
88
0
54
22
19
8
50
1.74
60819--60851
14
2.2
16
89
10
52
39
21
9
30
1.84
66700--66797
50
2.0
50
86
8
137
18
22
12
46
1.82
78929--78967
14
2.9
13
80
3
51
53
2
2
41
1.28
78950--79326
120
3.0
123
91
5
598
50
1
10
37
1.46

Tables:   1

The End!