Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01021244.1 Corchorus olitorius cultivar O-4 contig21277, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  23372

Tables:   1   

This is table  1  of  1  ( 14 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
458--487
15
1.9
16
93
6
53
20
6
6
66
1.38
1929--1981
22
2.4
22
81
6
63
62
11
7
18
1.52
9999--11872
56
34.2
56
86
6
2492
49
5
17
27
1.69
9999--11872
110
17.1
110
86
5
2504
49
5
17
27
1.69
10000--11880
164
11.5
165
86
5
2520
49
5
17
27
1.69
11672--11819
44
3.1
45
79
17
172
45
6
16
30
1.73
11624--11819
98
2.0
98
95
0
356
45
6
16
30
1.73
12740--12833
45
2.2
43
88
7
138
39
21
5
34
1.76
18355--18426
30
2.4
30
83
6
83
37
16
18
27
1.92
18539--18589
17
3.1
16
86
8
66
35
21
21
21
1.96
20151--20250
32
3.2
32
80
5
105
11
19
32
38
1.86
20153--20240
16
5.6
16
76
10
83
11
15
32
39
1.84
20157--20240
31
2.7
31
83
5
98
11
15
32
40
1.84
22414--22486
22
3.2
22
92
3
119
20
19
13
46
1.83

Tables:   1

The End!