Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01021518.1 Corchorus olitorius cultivar O-4 contig21551, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  23220

Tables:   1   

This is table  1  of  1  ( 12 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
5--64
2
31.0
2
93
6
106
0
51
0
48
1.00
1350--2735
53
25.9
52
80
6
1159
44
7
18
29
1.76
1357--2735
105
12.9
104
79
6
1118
44
7
18
29
1.76
2571--2674
54
2.1
46
81
16
120
49
5
14
30
1.67
8911--9097
95
2.0
94
92
1
311
40
14
15
29
1.88
10686--10734
15
3.3
15
88
0
80
44
42
2
10
1.49
10677--10733
30
1.9
30
92
0
96
45
43
1
8
1.45
20408--20488
39
2.0
40
90
2
128
50
7
3
38
1.48
20418--20478
17
3.2
18
68
20
52
50
9
3
36
1.52
20479--20525
25
1.9
24
91
4
76
31
6
6
55
1.51
21527--21596
36
1.9
36
88
5
106
60
10
10
20
1.57
22871--22983
58
1.9
58
87
7
167
33
21
13
31
1.92

Tables:   1

The End!