Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01021632.1 Corchorus olitorius cultivar O-4 contig21665, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  55079

Tables:   1   

This is table  1  of  1  ( 36 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
6772--7043
147
1.9
141
83
8
354
49
1
10
38
1.46
7139--7173
2
17.5
2
100
0
70
51
0
0
48
1.00
7516--7546
13
2.3
14
94
5
55
45
0
0
54
0.99
10374--10494
22
5.5
22
78
9
131
38
9
14
38
1.79
12476--12588
21
5.4
21
92
4
176
28
17
27
26
1.98
22993--23031
15
2.5
16
87
4
53
15
10
12
61
1.56
23206--23279
30
2.4
30
95
2
130
16
13
36
33
1.88
25687--25726
15
2.6
16
88
4
55
15
10
12
62
1.54
28410--28468
30
2.0
30
83
9
77
11
11
22
54
1.69
29389--29622
34
6.8
34
77
12
237
27
15
19
37
1.92
30299--30332
16
2.2
16
94
5
61
38
11
11
38
1.79
33331--33361
12
2.6
12
94
0
53
19
16
25
38
1.92
35323--35520
69
2.9
69
87
0
297
31
15
26
27
1.95
35605--35802
74
2.6
75
91
4
326
34
14
19
30
1.92
36200--36394
50
3.9
50
85
4
261
36
16
16
29
1.91
36201--36400
100
2.0
100
88
4
298
36
15
16
31
1.90
37004--37063
14
4.3
14
74
16
61
13
1
11
73
1.18
42549--42582
16
2.1
16
100
0
68
35
11
11
41
1.78
49387--49422
7
5.1
7
86
0
54
63
0
13
22
1.29
49362--49422
14
4.1
14
76
14
59
67
0
13
19
1.23
50839--51072
47
5.0
47
82
4
274
20
22
18
38
1.93
50839--51072
94
2.5
94
86
4
303
20
22
18
38
1.93
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
51087--51200
22
5.2
22
78
5
108
31
21
2
44
1.66
51099--51505
44
9.6
43
77
12
294
30
21
4
42
1.74
51145--51487
8
46.9
7
68
22
108
30
22
4
42
1.74
51188--51415
22
10.3
22
83
7
239
30
20
5
43
1.74
51144--51505
66
5.6
65
78
10
280
31
21
4
42
1.74
51268--51482
104
2.1
104
85
4
299
30
22
5
42
1.75
51312--51505
22
8.7
22
80
10
150
30
22
4
42
1.74
51504--51561
31
1.9
30
92
3
98
18
17
18
44
1.87
51535--51630
48
2.0
48
89
0
147
28
17
11
42
1.84
51635--51775
22
6.4
22
83
8
171
28
20
5
45
1.74
51701--51765
14
4.5
14
77
21
55
29
21
3
46
1.67
51702--51775
8
10.1
7
76
20
55
28
18
4
48
1.66
51746--51922
56
3.2
56
90
0
255
25
18
10
45
1.81
51867--52216
127
2.8
127
92
0
583
25
20
11
43
1.85

Tables:   1

The End!