genome.fa.s21776.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01021776.1 Corchorus olitorius cultivar O-4 contig21809, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  51616

Tables:   1   

This is table  1  of  1  ( 55 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41--92	25	2.1	24	89	3	77	59	3	5	30	1.39
41--101	25	2.6	25	84	7	74	59	4	6	29	1.44
3560--3759	32	6.2	32	80	4	224	22	17	15	45	1.86
4123--4150	9	3.1	9	100	0	56	21	53	14	10	1.70
4995--5330	55	6.1	55	93	0	519	44	18	14	22	1.86
6475--6520	21	2.2	21	96	0	83	13	26	34	26	1.92
6652--6712	32	1.9	32	100	0	122	47	16	6	29	1.72
6695--6836	51	2.9	49	80	6	142	61	10	9	18	1.53
6815--6855	20	2.1	20	90	4	66	68	9	7	14	1.39
6860--6905	20	2.3	20	81	3	58	65	6	8	19	1.43
6742--6905	69	2.3	71	81	4	190	61	10	9	18	1.54
6815--6955	49	2.9	49	86	4	178	61	10	9	18	1.54
6912--6989	21	3.8	21	78	10	97	52	12	8	25	1.68
6675--6966	120	2.5	120	91	2	473	58	11	9	20	1.59
6911--7273	41	8.4	42	69	17	215	57	11	8	23	1.61
6933--7014	20	4.1	20	80	10	105	59	10	9	19	1.58
7062--7102	20	2.1	20	95	4	75	65	9	9	14	1.46
7109--7146	20	1.9	20	94	0	67	57	7	5	28	1.49
6933--7304	89	4.2	89	94	3	617	57	11	8	22	1.61
6933--7304	177	2.1	179	92	3	628	57	11	8	22	1.61
7151--7190	20	2.1	19	90	9	64	67	10	7	15	1.41
7198--7235	20	1.9	20	94	0	67	57	7	5	28	1.49
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6742--7331	247	2.4	245	77	10	579	58	11	8	21	1.60
7240--7280	20	2.1	20	90	4	66	65	7	9	17	1.44
13740--13798	31	1.9	31	86	6	84	20	15	23	40	1.90
16450--16588	69	2.0	69	90	2	217	46	15	13	23	1.82
21776--22167	196	2.0	196	98	0	766	25	22	22	29	1.99
22548--22575	1	28.0	1	100	0	56	100	0	0	0	0.00
24348--24383	18	2.0	18	94	0	63	52	22	0	25	1.47
26305--26338	2	16.5	2	93	6	59	50	2	0	47	1.16
27084--27142	30	2.0	30	86	6	84	13	6	55	23	1.62
27942--27997	29	1.9	29	96	0	103	21	3	30	44	1.69
28856--28919	33	1.9	33	87	0	92	35	56	6	1	1.34
28863--28939	15	5.3	15	72	9	52	35	54	6	3	1.45
29443--29475	17	1.9	17	100	0	66	45	6	0	48	1.27
29742--29785	21	2.1	21	91	0	70	36	20	22	20	1.95
30543--30714	22	7.7	22	71	13	120	36	9	16	36	1.82
30540--30714	66	2.6	66	83	7	210	36	9	17	36	1.83
30544--31762	44	28.1	44	63	18	187	37	9	16	35	1.82
30813--31196	22	17.3	22	68	10	122	38	8	16	35	1.80
31237--31553	22	14.9	22	69	15	157	39	9	16	34	1.81
31447--31526	23	3.5	22	88	8	108	36	6	17	40	1.75
37355--37455	6	16.8	6	80	11	109	78	15	1	3	0.99
41180--41204	2	12.5	2	100	0	50	52	0	0	48	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41263--41411	22	6.8	22	75	13	112	38	12	9	38	1.76
41263--41421	44	3.6	45	79	8	143	37	13	9	38	1.78
41327--41421	22	4.3	21	78	10	75	37	16	10	34	1.84
41263--41421	66	2.4	65	76	14	155	37	13	9	38	1.78
41420--41471	22	2.4	22	80	6	61	25	13	7	53	1.65
42280--42329	2	25.0	2	91	0	82	46	0	2	52	1.12
42331--42355	2	12.5	2	100	0	50	52	0	48	0	1.00
43475--43537	27	2.3	26	82	15	67	47	3	4	44	1.40
45233--45260	1	28.0	1	100	0	56	100	0	0	0	0.00
50791--50852	25	2.5	25	73	5	72	43	3	9	43	1.53
51104--51134	2	15.5	2	100	0	62	51	0	0	48	1.00

Tables:   1

The End!