Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01021796.1 Corchorus olitorius cultivar O-4 contig21829, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  46773

Tables:   1   

This is table  1  of  1  ( 22 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
262--308
25
1.9
24
95
4
85
55
8
6
29
1.55
299--379
39
2.0
40
92
2
137
37
3
8
50
1.51
597--641
15
3.2
15
84
15
69
46
0
13
40
1.43
597--640
6
6.6
7
92
7
58
47
0
13
38
1.43
4917--4946
6
5.0
6
100
0
60
0
33
33
33
1.58
8780--8804
6
4.2
6
100
0
50
20
48
0
32
1.50
14417--14458
12
3.6
12
81
12
52
2
16
0
80
0.81
14417--14466
24
2.1
23
85
10
66
2
16
2
80
0.91
14433--14471
18
2.2
18
86
9
53
0
12
5
82
0.83
17529--17630
22
4.6
22
80
4
109
37
11
17
33
1.86
17522--17630
44
2.5
43
82
8
130
36
11
17
33
1.87
17554--17640
44
2.0
43
82
13
106
39
11
17
32
1.85
17646--17715
22
3.2
21
78
8
68
35
2
18
42
1.65
17724--17881
22
7.2
21
72
12
113
34
8
18
37
1.82
17724--17882
44
3.6
42
74
12
133
35
8
18
37
1.82
17724--17884
66
2.4
66
75
11
159
35
8
18
37
1.81
17974--18144
22
7.8
22
69
11
86
42
9
14
34
1.77
17972--18070
44
2.3
44
82
7
121
45
9
11
34
1.71
18224--18560
44
7.8
44
66
16
145
40
10
15
33
1.81
18238--18560
22
15.0
22
66
14
93
40
10
15
33
1.81
21637--21679
21
2.0
21
100
0
86
32
44
0
23
1.54
46191--46225
2
17.0
2
94
5
61
48
0
2
48
1.16

Tables:   1

The End!