Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01022032.1 Corchorus olitorius cultivar O-4 contig22065, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  45463

Tables:   1   

This is table  1  of  1  ( 21 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
431--476
24
2.0
23
95
4
83
54
8
6
30
1.56
467--547
39
2.0
40
90
2
128
38
3
7
50
1.48
763--828
2
32.5
2
81
3
78
51
0
6
42
1.26
2049--2105
25
2.4
24
85
5
71
29
5
3
61
1.35
6950--7053
49
2.2
47
87
3
145
27
14
4
52
1.61
6962--7067
49
2.2
49
83
5
135
27
16
5
50
1.68
8755--8808
17
3.4
17
65
19
53
35
9
20
35
1.85
8757--8817
30
2.0
30
100
0
122
34
9
19
36
1.85
11801--11851
22
2.2
24
83
16
72
41
0
0
58
0.98
11801--11849
25
2.0
25
84
8
64
40
0
0
59
0.98
18375--18404
16
1.9
16
93
6
53
0
0
13
86
0.57
21620--21809
67
2.8
67
86
7
262
42
13
5
38
1.69
21919--21953
2
17.5
2
93
0
61
51
2
0
45
1.16
25451--25742
84
3.4
85
83
6
369
22
11
27
38
1.89
25451--25744
41
6.9
42
70
12
156
22
11
27
38
1.89
25451--25742
86
3.4
86
83
5
380
22
11
27
38
1.89
37640--37681
15
2.7
15
92
7
66
28
4
16
50
1.66
38792--38852
17
3.2
18
68
28
54
49
8
3
39
1.49
38965--39376
203
2.0
203
94
1
738
35
11
9
43
1.73
40225--40269
14
3.5
12
84
9
54
31
0
11
57
1.33
41517--41586
36
1.9
36
91
0
113
60
8
10
21
1.55

Tables:   1

The End!