genome.fa.s22081.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01022081.1 Corchorus olitorius cultivar O-4 contig22114, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  34897

Tables:   1   

This is table  1  of  1  ( 33 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30--498	19	22.8	19	67	24	194	53	1	17	27	1.54
1--542	65	8.7	63	88	7	767	53	1	17	27	1.54
1--542	252	2.2	249	94	3	950	53	1	17	27	1.54
483--590	43	2.5	44	92	1	173	50	0	20	27	1.54
85--697	19	30.6	19	66	19	94	52	1	18	27	1.55
566--739	88	2.0	89	89	1	269	49	1	18	31	1.55
701--834	27	5.1	26	64	20	73	44	1	21	32	1.62
665--834	52	3.3	52	88	1	252	45	1	21	31	1.62
824--959	25	5.2	26	72	18	86	45	2	24	27	1.65
847--1018	53	3.1	53	70	18	141	47	3	21	27	1.67
927--993	35	1.9	35	84	3	91	46	7	22	23	1.77
790--1055	140	1.9	139	81	10	319	46	2	22	28	1.65
15322--15377	29	1.9	29	82	7	69	35	26	1	35	1.67
16661--16865	67	3.2	61	85	8	266	16	9	20	54	1.70
17346--17904	19	26.8	19	64	27	141	53	1	18	27	1.51
17332--17606	65	4.5	60	85	10	353	53	1	18	26	1.53
17332--17606	122	2.2	123	95	1	498	53	1	18	26	1.53
17430--17658	103	2.2	102	87	6	320	54	0	18	26	1.47
17486--17716	103	2.2	107	91	6	371	53	0	18	28	1.44
17591--17852	129	2.0	129	94	1	463	53	0	18	27	1.50
17591--17852	65	4.1	64	95	1	461	53	0	18	27	1.50
17742--18028	104	2.7	103	86	7	359	52	1	19	27	1.54
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17870--17996	44	2.9	44	86	8	170	51	0	19	27	1.52
17889--17996	43	2.5	44	92	1	173	51	0	19	27	1.53
17523--18015	19	23.6	19	65	22	120	52	0	18	28	1.51
18043--18085	18	2.4	18	88	0	59	58	2	11	27	1.46
17967--18134	70	2.4	71	89	1	248	47	1	19	31	1.57
18057--18170	52	2.2	52	88	0	165	47	1	21	29	1.61
18089--18170	27	3.1	26	69	13	69	45	1	21	31	1.60
18084--18160	25	2.9	27	71	11	79	45	1	24	28	1.61
18157--18230	25	2.8	26	84	8	87	48	0	22	28	1.51
18183--18354	53	3.1	53	68	18	123	45	2	21	29	1.66
34147--34242	31	3.1	31	87	0	138	41	12	14	31	1.83

Tables:   1

The End!