Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01022197.1 Corchorus olitorius cultivar O-4 contig22230, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  25009

Tables:   1   

This is table  1  of  1  ( 12 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
511--595
41
2.0
42
84
8
111
47
0
21
31
1.51
1688--1936
63
4.0
63
100
0
498
35
17
9
37
1.82
5921--6012
40
2.3
40
94
0
166
35
18
33
11
1.88
6028--6591
40
14.1
40
89
3
873
36
20
24
18
1.94
5903--6591
201
3.4
200
85
6
883
36
20
25
17
1.94
6599--7316
42
16.9
43
85
3
886
36
18
26
19
1.94
6599--7316
85
8.5
86
84
4
886
36
18
26
19
1.94
10637--10711
39
1.9
39
97
0
141
48
24
16
12
1.79
15457--15500
22
2.0
21
83
16
54
52
2
36
9
1.46
19947--20031
31
2.9
30
81
12
104
35
4
10
49
1.58
23434--23498
32
2.0
32
84
0
85
53
4
10
30
1.56
23555--23636
41
2.0
42
90
7
132
34
4
23
37
1.76

Tables:   1

The End!